| ID | SAVERM_1667
| Type | CDS
|
| From | 2039751
| nt length | 1005
|
| To | 2038747
| aa length | 334
|
| Gene | bdpL
| pI | 7.16
|
| Definition | putative AraC-family transcriptional regulator
| M.W (Da) | 36043
|
| Note | PF01965: DJ-1/PfpI family, PF00165: Bacterial regulatory helix-turn-helix proteins, AraC family
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6746 putative transcriptional regulator | 521 | 0.0e+00
|
| sgr | SGR_982 putative AdpA-family transcriptional regulator | 459 | 3.0e-164
|
| sam | SAM23877_6396 Transcriptional regulator | 523 | 0.0e+00
|
| scab | SCAB13151 putative AraC-family transcriptional regulator | 547 | 0.0e+00
|
| sace | SACE_6420 transcriptional regulator, AraC family | 245 | 6.0e-81
|
| nfar | nfa23690 transcriptional regulator | 285 | 3.9e-78
|
| mtub | gi|15609068 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 120 | 9.8e-29
|
| bsub | BG10834 ybbB, yzbC; similar to transcriptional regulator (AraC/XylS family) | 56 | 2.0e-09
|
| ecoli | gi|16131792 putative ARAC-type regulatory protein [Escherichia coli K12] | 64 | 1.1e-11
|
| paer | PA1850 [gene=PA1850] [prot=probable transcriptional regulator] [comment=PA1850] | 263 | 1.7e-71
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DJ-1_PfpI | 1 | DJ-1/PfpI family | 20-187 | 111.5 | 3.1e-32
|
| HTH_18 | 1 | Helix-turn-helix domain | 248-327 | 85.4 | 2.2e-24
|
| HTH_AraC | 1 | Bacterial regulatory helix-turn-helix proteins, AraC family | 235-274 | 58.8 | 3.4e-16
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| SFF82764.1 | transcriptional regulator, AraC family with amidase-like domain ...
| 1498 | 0.0e+00 |
| SOE55318.1 | transcriptional regulator, AraC family with amidase-like domain ...
| 1494 | 0.0e+00 |
| QDN61505.1 | GlxA family transcriptional regulator [Streptomyces sp. S1D4-20] ...
| 1493 | 0.0e+00 |
|
| 1492 | 0.0e+00 |
| PBC94513.1 | AraC family transcriptional regulator with amidase-like domain [S...
| 1490 | 0.0e+00 |
| QDN81859.1 | GlxA family transcriptional regulator [Streptomyces sp. S1A1-7]
| 1488 | 0.0e+00 |
| GAX49036.1 | transcriptional regulator [Streptomyces olivochromogenes]
| 1486 | 0.0e+00 |
| SOE32188.1 | transcriptional regulator, AraC family with amidase-like domain ...
| 1486 | 0.0e+00 |
| QDN91740.1 | GlxA family transcriptional regulator [Streptomyces sp. RLB3-6] >...
| 1483 | 0.0e+00 |
| WP_097223921.1 | GlxA family transcriptional regulator [Streptomyces sp. OV19...
| 1438 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2444 | Seems to have no N-terminal signal seq.
|