| ID | SAVERM_1669
| Type | CDS
|
| From | 2040961
| nt length | 2433
|
| To | 2043393
| aa length | 810
|
| Gene |
| pI | 6.68
|
| Definition | putative transcription accessory protein
| M.W (Da) | 87264
|
| Note | PF00575: S1 RNA binding domain
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6743 putative transcriptional accessory protein | 1330 | 0.0e+00
|
| sgr | SGR_984 putative transcription accessory protein | 1257 | 0.0e+00
|
| sam | SAM23877_6393 transcriptional accessory protein | 1372 | 0.0e+00
|
| scab | SCAB13181 putative transcription accessory protein | 1387 | 0.0e+00
|
| sace | SACE_5346 RNA binding S1:resolvase, RNase H-like fold | 1154 | 0.0e+00
|
| nfar | nfa41490 RNA-binding protein | 1046 | 0.0e+00
|
| cglu | gi|19553245 COG2183:Predicted RNA binding protein, contains S1 domain [Corynebacterium glutamicum] | 910 | 0.0e+00
|
| bsub | BG12096 ydcI; similar to hypothetical proteins | 554 | 8.5e-159
|
| ecoli | gi|49176349 hypothetical protein b3407 [Escherichia coli K12] | 850 | 0.0e+00
|
| paer | PA5201 [gene=PA5201] [prot=conserved hypothetical protein] [comment=PA5201] | 927 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Tex_N | 1 | Tex-like protein N-terminal domain | 13-196 | 220.5 | 1.1e-65
|
| Tex_YqgF | 1 | Tex protein YqgF-like domain | 330-455 | 172.4 | 4.5e-51
|
| HHH_3 | 1 | Helix-hairpin-helix motif | 495-559 | 95.0 | 2.2e-27
|
| S1 | 1 | S1 RNA binding domain | 653-724 | 69.0 | 3e-19
|
| HHH_7 | 1 | Helix-hairpin-helix motif | 468-560 | 30.1 | 4.3e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497328.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3273 | 0.0e+00 |
| QIY99712.1 | RNA-binding transcriptional accessory protein [Streptomyces sp. S...
| 3149 | 0.0e+00 |
| WP_168498186.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3146 | 0.0e+00 |
| WP_217571990.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3143 | 0.0e+00 |
| WP_190168301.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3141 | 0.0e+00 |
| WP_075030370.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3135 | 0.0e+00 |
| WP_212726312.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3134 | 0.0e+00 |
| WP_189185893.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3133 | 0.0e+00 |
| WP_143603752.1 | MULTISPECIES: RNA-binding transcriptional accessory protein ...
| 3127 | 0.0e+00 |
| WP_181648949.1 | RNA-binding transcriptional accessory protein [Streptomyces ...
| 3127 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1489 | Seems to have no N-terminal signal seq.
|