| ID | SAVERM_1696
| Type | CDS
|
| From | 2075428
| nt length | 1017
|
| To | 2074412
| aa length | 338
|
| Gene |
| pI | 6.1
|
| Definition | putative DNA primase, small subunit
| M.W (Da) | 38297
|
| Note | PF01896: Eukaryotic and archaeal DNA primase small subunit
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6709 hypothetical protein | 578 | 0.0e+00
|
| sgr | SGR_1023 conserved hypothetical protein | 544 | 0.0e+00
|
| sam | SAM23877_6362 hypothetical protein | 581 | 0.0e+00
|
| scab | SCAB13581 hypothetical protein | 611 | 0.0e+00
|
| sace | SACE_1849 possible DNA ligase (ATP) | 404 | 2.0e-142
|
| nfar | nfa13650 hypothetical protein | 347 | 6.5e-97
|
| mtub | gi|15610866 hypothetical protein Rv3730c [Mycobacterium tuberculosis H37Rv] | 382 | 1.4e-107
|
| bsub | BG13264 ykoU; hypothetical protein | 132 | 2.2e-32
|
| paer | PA2138 [gene=PA2138] [prot=probable ATP-dependent DNA ligase] [comment=PA2138] | 155 | 6.5e-39
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_primase_S | 1 | DNA primase small subunit | 135-256 | 43.7 | 3e-11
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_095937826.1 | non-homologous end-joining DNA ligase [Streptomyces sp. Tue6...
| 1627 | 0.0e+00 |
| WP_189185939.1 | non-homologous end-joining DNA ligase [Streptomyces albiflav...
| 1625 | 0.0e+00 |
| WP_037618095.1 | non-homologous end-joining DNA ligase [Streptomyces aureus]
| 1621 | 0.0e+00 |
| WP_067361434.1 | MULTISPECIES: non-homologous end-joining DNA ligase [Strepto...
| 1618 | 0.0e+00 |
| WP_099502383.1 | MULTISPECIES: non-homologous end-joining DNA ligase [Strepto...
| 1616 | 0.0e+00 |
| WP_168531117.1 | non-homologous end-joining DNA ligase [Streptomyces sp. RPA4...
| 1613 | 0.0e+00 |
| WP_081220384.1 | non-homologous end-joining DNA ligase [Streptomyces sp. M41(...
| 1612 | 0.0e+00 |
| WP_153287639.1 | non-homologous end-joining DNA ligase [Streptomyces fagopyri...
| 1612 | 0.0e+00 |
| WP_060897322.1 | MULTISPECIES: non-homologous end-joining DNA ligase [unclass...
| 1612 | 0.0e+00 |
| WP_168498136.1 | non-homologous end-joining DNA ligase [Streptomyces sp. RLB1...
| 1611 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4248 | Seems to have no N-terminal signal seq.
|