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IDSAVERM_1808 TypeCDS
From2210155 nt length642
To2209514 aa length213
Genesig18 pI9.22
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23477
NotePF08281: Sigma-70, region 4 AseI frg.C
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4122-17141.29.2e-11

Sigma70_r21Sigma-70 region 230-9032.64.6e-08

Sigma70_r41Sigma-70, region 4124-17327.02.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_123972131.1 RNA polymerase sigma factor [Streptomyces sp. Ag109_O5-1] >g... 5532.4e-69
WP_053852123.1 RNA polymerase sigma factor [Streptomyces sp. NRRL B-24085] 5523.2e-69
WP_164420925.1 RNA polymerase sigma factor [Streptomyces sp. SID13726] >gb 5523.6e-69
WP_125195483.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5514.7e-69
5452.8e-68
WP_007385448.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 5463.3e-68
WP_093698095.1 RNA polymerase sigma factor [Streptomyces sp. 2231.1] >emb 5494.5e-68
WP_089107322.1 RNA polymerase sigma factor [Streptomyces hyaluromycini] 5434.8e-68
WP_031053260.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 5411.7e-67
WP_093473156.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 5451.9e-67

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1205 Seems to have no N-terminal signal seq.