| ID | SAVERM_1905
| Type | CDS
|
| From | 2331042
| nt length | 1041
|
| To | 2332082
| aa length | 346
|
| Gene |
| pI | 7.97
|
| Definition | hypothetical protein
| M.W (Da) | 38811
|
| Note | PF04055: Radical SAM superfamily
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6481 conserved hypothetical protein | 596 | 0.0e+00
|
| sgr | SGR_1163 conserved hypothetical protein | 559 | 0.0e+00
|
| sam | SAM23877_6074 hypothetical protein | 329 | 2.0e-114
|
| scab | SCAB17561 hypothetical protein | 584 | 0.0e+00
|
| sace | SACE_2037 radical SAM domain protein | 366 | 7.0e-127
|
| nfar | nfa36590 hypothetical protein | 339 | 2.4e-94
|
| mtub | gi|15609715 hypothetical protein Rv2578c [Mycobacterium tuberculosis H37Rv] | 306 | 1.0e-84
|
| bsub | BG13599 yomL; similar to hypothetical proteins from B. subtilis | 32 | 4.2e-02
|
| paer | PA0069 [gene=PA0069] [prot=conserved hypothetical protein] [comment=PA0069] | 175 | 6.3e-45
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Radical_SAM | 1 | Radical SAM superfamily | 65-237 | 34.8 | 1.8e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_037621456.1 | Rv2578c family radical SAM protein [Streptomyces aureus]
| 1524 | 0.0e+00 |
| WP_138045044.1 | Rv2578c family radical SAM protein [Streptomyces montanus] >...
| 1523 | 0.0e+00 |
| WP_165263494.1 | Rv2578c family radical SAM protein [Streptomyces scabichelin...
| 1520 | 0.0e+00 |
| WP_095851687.1 | Rv2578c family radical SAM protein [Streptomyces sp. Ag82_O1...
| 1517 | 0.0e+00 |
| WP_033320209.1 | Rv2578c family radical SAM protein [Streptomyces yerevanensi...
| 1516 | 0.0e+00 |
| WP_099498454.1 | MULTISPECIES: Rv2578c family radical SAM protein [Streptomyc...
| 1516 | 0.0e+00 |
| WP_099919810.1 | Rv2578c family radical SAM protein [Streptomyces mirabilis] ...
| 1516 | 0.0e+00 |
| WP_097286871.1 | MULTISPECIES: Rv2578c family radical SAM protein [unclassifi...
| 1516 | 0.0e+00 |
| WP_181649235.1 | Rv2578c family radical SAM protein [Streptomyces sp. WAC0026...
| 1516 | 0.0e+00 |
| WP_097224127.1 | Rv2578c family radical SAM protein [Streptomyces sp. OV198] ...
| 1516 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2638 | Seems to have no N-terminal signal seq.
|