| ID | SAVERM_2028
| Type | CDS
|
| From | 2470980
| nt length | 1785
|
| To | 2469196
| aa length | 594
|
| Gene | gcl
| pI | 5.7
|
| Definition | putative glyoxylate carboligase
| M.W (Da) | 64017
|
| Note | PF02776: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6201 putative glyoxylate carboligase | 1112 | 0.0e+00
|
| sgr | SGR_1329 putative glyoxylate carboligase | 1062 | 0.0e+00
|
| sam | SAM23877_5941 glyoxylate carboligase | 1106 | 0.0e+00
|
| scab | SCAB18601 putative glyoxylate carboligase | 1099 | 0.0e+00
|
| sace | SACE_1935 putative glyoxylate carboligase | 936 | 0.0e+00
|
| ecoli | gi|16128491 glyoxylate carboligase [Escherichia coli K12] | 855 | 0.0e+00
|
| paer | PA1502 [gene=gcl] [prot=glyoxylate carboligase] [comment=PA1502] | 871 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TPP_enzyme_N | 1 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 4-172 | 180.5 | 2e-53
|
| TPP_enzyme_C | 1 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 393-552 | 115.2 | 2e-33
|
| TPP_enzyme_M | 1 | Thiamine pyrophosphate enzyme, central domain | 193-327 | 114.7 | 2.4e-33
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1813 | Seems to have no N-terminal signal seq.
|