| ID | SAVERM_2086
| Type | CDS
|
| From | 2541288
| nt length | 1128
|
| To | 2540161
| aa length | 375
|
| Gene | engC
| pI | 5.94
|
| Definition | putative ribosome-associated GTPase
| M.W (Da) | 39990
|
| Note | PF03193: Protein of unknown function, DUF258
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6149 putative integral membrane nucleotide binding protein | 594 | 0.0e+00
|
| sgr | SGR_1369 conserved hypothetical protein | 538 | 0.0e+00
|
| sam | SAM23877_5864 putative ribosome biogenesis GTPase RsgA | 593 | 0.0e+00
|
| scab | SCAB19351 putative GTPase | 629 | 0.0e+00
|
| sace | SACE_7050 putative ATP/GTP-binding protein | 339 | 6.0e-116
|
| nfar | nfa2160 hypothetical protein | 338 | 3.4e-94
|
| bsub | BG13392 yloQ; similar to hypothetical proteins | 104 | 9.6e-24
|
| ecoli | gi|49176465 ribosome-associated GTPase [Escherichia coli K12] | 142 | 4.7e-35
|
| paer | PA4952 [gene=PA4952] [prot=conserved hypothetical protein] [comment=PA4952] | 155 | 7.4e-39
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RsgA_GTPase | 1 | RsgA GTPase | 102-278 | 156.5 | 5.4e-46
|
| MMR_HSR1 | 1 | 50S ribosome-binding GTPase | 214-293 | 30.6 | 2.6e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_168496936.1 | MULTISPECIES: ribosome small subunit-dependent GTPase A [Str...
| 1549 | 0.0e+00 |
| WP_152172433.1 | ribosome small subunit-dependent GTPase A [Streptomyces phae...
| 1541 | 0.0e+00 |
| WP_152777848.1 | ribosome small subunit-dependent GTPase A [Streptomyces spon...
| 1536 | 0.0e+00 |
| WP_217177497.1 | ribosome small subunit-dependent GTPase A [Streptomyces sp. ...
| 1534 | 0.0e+00 |
| WP_220645888.1 | ribosome small subunit-dependent GTPase A [Streptomyces sp. ...
| 1532 | 0.0e+00 |
|
| 1531 | 0.0e+00 |
| WP_216590965.1 | ribosome small subunit-dependent GTPase A [Streptomyces bras...
| 1531 | 0.0e+00 |
| WP_230213330.1 | ribosome small subunit-dependent GTPase A [Streptomyces sp. ...
| 1531 | 0.0e+00 |
| WP_086758192.1 | ribosome small subunit-dependent GTPase A [Streptomyces scab...
| 1530 | 0.0e+00 |
| WP_015656943.1 | ribosome small subunit-dependent GTPase A [Streptomyces dava...
| 1529 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2296 | Seems to have no N-terminal signal seq.
|