| ID | SAVERM_2120
| Type | CDS
|
| From | 2586424
| nt length | 963
|
| To | 2585462
| aa length | 320
|
| Gene |
| pI | 6.15
|
| Definition | putative AraC-family transcriptional regulator
| M.W (Da) | 34583
|
| Note | PF00165: Bacterial regulatory helix-turn-helix proteins, AraC family
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6118 putative AraC family transcriptional regulator | 483 | 5.0e-174
|
| sgr | SGR_1129 putative AraC-family transcriptional regulator | 356 | 6.0e-124
|
| sam | SAM23877_5830 Transcriptional regulator, AraC family | 470 | 2.0e-169
|
| scab | SCAB52531 putative AraC-family transcriptional regulator | 213 | 9.0e-68
|
| sace | SACE_4934 AraC family transcriptional regulator | 305 | 4.0e-104
|
| nfar | nfa23000 transcriptional regulator | 356 | 1.7e-99
|
| ecoli | gi|16128290 putative ARAC-type regulatory protein [Escherichia coli K12] | 84 | 7.3e-18
|
| paer | PA0564 [gene=PA0564] [prot=probable transcriptional regulator] [comment=PA0564] | 83 | 1.7e-17
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Cupin_6 | 1 | Cupin | 2-191 | 166.9 | 3.6e-49
|
| HTH_18 | 1 | Helix-turn-helix domain | 230-307 | 69.6 | 1.8e-19
|
| HTH_AraC | 1 | Bacterial regulatory helix-turn-helix proteins, AraC family | 272-308 | 65.0 | 3.9e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_119098591.1 | AraC family transcriptional regulator [Streptomyces sporangi...
| 1180 | 7.2e-161 |
| WP_075031035.1 | AraC family transcriptional regulator [Streptomyces mirabili...
| 1177 | 1.8e-160 |
| WP_217566067.1 | AraC family transcriptional regulator [Streptomyces sp. Gbtc...
| 1176 | 2.7e-160 |
| WP_165259878.1 | AraC family transcriptional regulator [Streptomyces scabiche...
| 1174 | 6.6e-160 |
| WP_189327808.1 | AraC family transcriptional regulator [Streptomyces flaveus]
| 1173 | 7.5e-160 |
| WP_189192528.1 | AraC family transcriptional regulator [Streptomyces albiflav...
| 1173 | 9.7e-160 |
| QIY98948.1 | AraC family transcriptional regulator [Streptomyces sp. S1D4-11]
| 1171 | 1.4e-159 |
| WP_190174461.1 | AraC family transcriptional regulator [Streptomyces mirabili...
| 1170 | 2.2e-159 |
| WP_033329196.1 | AraC family transcriptional regulator [Streptomyces yerevane...
| 1170 | 2.4e-159 |
| WP_165337475.1 | AraC family transcriptional regulator [Streptomyces ureilyti...
| 1170 | 2.5e-159 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1510 | Seems to have no N-terminal signal seq.
|