| ID | SAVERM_2152
| Type | CDS
|
| From | 2621126
| nt length | 2388
|
| To | 2623513
| aa length | 795
|
| Gene | amyA1
| pI | 5.89
|
| Definition | putative alpha-amylase
| M.W (Da) | 86075
|
| Note | PF00128: Alpha amylase, catalytic domain
| AseI frg. | O
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6081 putative alpha amylase | 1155 | 0.0e+00
|
| sgr | SGR_1425 putative alpha-amylase | 999 | 0.0e+00
|
| sam | SAM23877_5798 Maltooligosyl trehalose synthase | 1204 | 0.0e+00
|
| scab | SCAB20021 putative alpha-amylase | 1170 | 0.0e+00
|
| nfar | nfa18140 glycosyl hydrolase | 455 | 7.9e-129
|
| mtub | gi|57116885 Maltooligosyltrehalose synthase TreY [Mycobacterium tuberculosis H37Rv] | 479 | 3.9e-136
|
| cglu | gi|19553316 COG3280:Maltooligosyl trehalose synthase [Corynebacterium glutamicum] | 424 | 6.1e-120
|
| paer | PA2162 [gene=PA2162] [prot=probable glycosyl hydrolase] [comment=PA2162] | 278 | 1.4e-75
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Alpha-amylase | 1 | Alpha amylase, catalytic domain | 33-245 | 68.7 | 6e-19
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_097224503.1 | malto-oligosyltrehalose synthase [Streptomyces sp. OV198] >e...
| 3217 | 0.0e+00 |
| WP_217566093.1 | malto-oligosyltrehalose synthase [Streptomyces sp. GbtcB7]
| 3214 | 0.0e+00 |
| QIY98920.1 | malto-oligosyltrehalose synthase [Streptomyces sp. S1D4-11]
| 3209 | 0.0e+00 |
| WP_143609445.1 | MULTISPECIES: malto-oligosyltrehalose synthase [unclassified...
| 3207 | 0.0e+00 |
| WP_099498880.1 | MULTISPECIES: malto-oligosyltrehalose synthase [Streptomyces...
| 3205 | 0.0e+00 |
| WP_212726765.1 | malto-oligosyltrehalose synthase [Streptomyces mirabilis] >g...
| 3201 | 0.0e+00 |
| WP_075031005.1 | malto-oligosyltrehalose synthase [Streptomyces mirabilis] >e...
| 3198 | 0.0e+00 |
| WP_190173012.1 | malto-oligosyltrehalose synthase [Streptomyces mirabilis] >d...
| 3197 | 0.0e+00 |
| WP_067375850.1 | malto-oligosyltrehalose synthase [Streptomyces olivochromoge...
| 3196 | 0.0e+00 |
| WP_143656072.1 | malto-oligosyltrehalose synthase [Streptomyces sp. S1A1-7] >...
| 3193 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3348 | Seems to have no N-terminal signal seq.
|