| ID | SAVERM_2159
| Type | CDS
|
| From | 2630209
| nt length | 1746
|
| To | 2631954
| aa length | 581
|
| Gene | amyA2
| pI | 5.49
|
| Definition | putative alpha-amylase
| M.W (Da) | 63692
|
| Note | PF00128: Alpha amylase, catalytic domain
| AseI frg. | O
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6078 putative alpha amylase | 974 | 0.0e+00
|
| sgr | SGR_1432 putative alpha-amylase | 862 | 0.0e+00
|
| sam | SAM23877_5792 Malto-oligosyltrehalose trehalohydrolase | 971 | 0.0e+00
|
| scab | SCAB20081 putative alpha-amylase | 947 | 0.0e+00
|
| nfar | nfa18050 glycosyl hydrolase | 640 | 0.0e+00
|
| mtub | gi|57116884 Maltooligosyltrehalose trehalohydrolase TreZ [Mycobacterium tuberculosis H37Rv] | 598 | 2.4e-172
|
| cglu | gi|19553325 COG0296:1,4-alpha-glucan branching enzyme [Corynebacterium glutamicum] | 464 | 6.4e-132
|
| paer | PA2164 [gene=PA2164] [prot=probable glycosyl hydrolase] [comment=PA2164] | 348 | 1.0e-96
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF3459 | 1 | Domain of unknown function (DUF3459) | 490-577 | 65.1 | 5.2e-18
|
| Alpha-amylase | 1 | Alpha amylase, catalytic domain | 108-190 | 57.7 | 1.3e-15
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055494669.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces sp. T...
| 2593 | 0.0e+00 |
| WP_200418308.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces sp. Y...
| 2587 | 0.0e+00 |
| NGO13728.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces scabicheli...
| 2581 | 0.0e+00 |
| WP_103838817.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces sp. R...
| 2578 | 0.0e+00 |
| WP_119105554.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces spora...
| 2578 | 0.0e+00 |
|
| 2577 | 0.0e+00 |
| WP_138049706.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces monta...
| 2574 | 0.0e+00 |
| WP_151481822.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces albic...
| 2573 | 0.0e+00 |
| WP_033322603.1 | malto-oligosyltrehalose trehalohydrolase [Streptomyces yerev...
| 2568 | 0.0e+00 |
| WP_222810318.1 | MULTISPECIES: malto-oligosyltrehalose trehalohydrolase [uncl...
| 2565 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1539 | Seems to have no N-terminal signal seq.
|