| ID | SAVERM_2231
| Type | CDS
|
| From | 2710371
| nt length | 1281
|
| To | 2711651
| aa length | 426
|
| Gene | rnd
| pI | 5.23
|
| Definition | putative ribonuclease D
| M.W (Da) | 45811
|
| Note | PF01612: 3'-5' exonuclease
| AseI frg. | O
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6028 hypothetical protein | 664 | 0.0e+00
|
| sgr | SGR_1476 putative ribonuclease D | 600 | 0.0e+00
|
| sam | SAM23877_5746 Ribonuclease D | 679 | 0.0e+00
|
| scab | SCAB20891 putative ribonuclease D | 660 | 0.0e+00
|
| sace | SACE_1832 putative ribonuclease D (partial match) | 365 | 1.0e-124
|
| nfar | nfa37400 rnd RNase D | 447 | 6.2e-127
|
| mtub | gi|15609818 CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] | 414 | 5.8e-117
|
| cglu | gi|19553105 COG0349:Ribonuclease D [Corynebacterium glutamicum] | 320 | 8.0e-89
|
| ecoli | gi|16129758 RNase D, processes tRNA precursor [Escherichia coli K12] | 100 | 2.4e-22
|
| paer | PA1294 [gene=rnd] [prot=ribonuclease D] [comment=PA1294] | 100 | 1.9e-22
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_pol_A_exo1 | 1 | 3'-5' exonuclease | 42-205 | 118.5 | 2.4e-34
|
| HRDC | 1 | HRDC domain | 247-311 | 51.6 | 6.5e-14
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1192 | Seems to have no N-terminal signal seq.
|