| ID | SAVERM_2244
| Type | CDS
|
| From | 2732397
| nt length | 1929
|
| To | 2730469
| aa length | 642
|
| Gene | dxs2
| pI | 5.82
|
| Definition | putative 1-deoxy-D-xylulose 5-phosphate synthase
| M.W (Da) | 68726
|
| Note | MEP pathway, EC 4.1.3.37
| AseI frg. | O
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6013 putative 1-deoxy-D-xylulose 5-phosphate synthase | 1206 | 0.0e+00
|
| sgr | SGR_1495 putative 1-deoxy-D-xylulose 5-phosphate synthase | 1159 | 0.0e+00
|
| sam | SAM23877_5729 1-deoxy-D-xylulose-5-phosphate synthase 2 | 1214 | 0.0e+00
|
| scab | SCAB20991 putative 1-deoxy-D-xylulose 5-phosphate synthase | 1213 | 0.0e+00
|
| sace | SACE_1815 1-deoxyxylulose-5-phosphate synthase | 783 | 0.0e+00
|
| nfar | nfa37410 dxs 1-deoxy-D-xylulose 5-phosphate synthase | 743 | 0.0e+00
|
| mtub | gi|57117013 1-deoxy-D-xylulose-5-phosphate synthase [Mycobacterium tuberculosis H37Rv] | 757 | 0.0e+00
|
| cglu | gi|19553106 COG1154:Deoxyxylulose-5-phosphate synthase [Corynebacterium glutamicum] | 686 | 0.0e+00
|
| bsub | BG11715 dxs, yqiE; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.-.-] | 464 | 6.9e-132
|
| ecoli | gi|16128405 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli K12] | 436 | 2.9e-123
|
| paer | PA4044 [gene=dxs] [prot=1-deoxyxylulose-5-phosphate synthase] [comment=PA4044] | 440 | 2.2e-124
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DXP_synthase_N | 1 | 1-deoxy-D-xylulose-5-phosphate synthase | 4-279 | 358.2 | 2.3e-107
|
| Transket_pyr | 1 | Transketolase, pyrimidine binding domain | 315-477 | 127.7 | 3.4e-37
|
| Transketolase_C | 1 | Transketolase, C-terminal domain | 499-612 | 103.0 | 9.4e-30
|
| TPP_enzyme_C | 1 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 111-277 | 32.0 | 8.7e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497879.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces sp. SI...
| 3318 | 0.0e+00 |
| WP_054234015.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces sp. S1...
| 3213 | 0.0e+00 |
| WP_060899985.1 | MULTISPECIES: 1-deoxy-D-xylulose-5-phosphate synthase [Strep...
| 3210 | 0.0e+00 |
| WP_097286578.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces sp. OK...
| 3209 | 0.0e+00 |
| WP_217566148.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces sp. Gb...
| 3206 | 0.0e+00 |
| WP_095852117.1 | MULTISPECIES: 1-deoxy-D-xylulose-5-phosphate synthase [uncla...
| 3206 | 0.0e+00 |
| WP_143614710.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces sp. RL...
| 3205 | 0.0e+00 |
| WP_153288094.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces fagopy...
| 3205 | 0.0e+00 |
| WP_067019757.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces dyside...
| 3204 | 0.0e+00 |
| WP_067375441.1 | 1-deoxy-D-xylulose-5-phosphate synthase [Streptomyces olivoc...
| 3203 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2890 | Seems to have no N-terminal signal seq.
|