| ID | SAVERM_2381
| Type | CDS
|
| From | 2906589
| nt length | 786
|
| To | 2907374
| aa length | 261
|
| Gene |
| pI | 9.08
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 28473
|
| Note | pks9 gene cluster, PF02909: Tetracyclin repressor, C-terminal all-alpha domain
| AseI frg. | M
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO7624 putative tetR-family regulatory protein | 141 | 7.0e-42
|
| sgr | SGR_3119 putative TetR-family transcriptional regulator | 120 | 3.0e-33
|
| sam | SAM23877_3362 TetR family transcriptional regulatory protein | 124 | 5.0e-35
|
| scab | SCAB88741 putative TetR-family transcriptional regulator | 140 | 1.0e-41
|
| sace | SACE_3407 transcriptional regulator, TetR family | 112 | 2.0e-30
|
| nfar | nfa22870 transcriptional regulator | 122 | 3.2e-29
|
| mtub | gi|15608493 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 66 | 2.1e-12
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_C | 1 | Tetracyclin repressor, C-terminal all-alpha domain | 74-222 | 158.8 | 7e-47
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 21-62 | 35.3 | 6.6e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237528774.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 1206 | 2.3e-166 |
| WP_030321440.1 | TetR/AcrR family transcriptional regulator [Streptomyces fla...
| 1130 | 4.4e-155 |
| WP_019993338.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [un...
| 1064 | 6.1e-145 |
| WP_014048965.1 | unnamed protein product [Streptomyces sp. SID4939] >gb
| 1064 | 7.4e-145 |
| WP_226995184.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [un...
| 1063 | 1.1e-144 |
| WP_061928200.1 | TetR/AcrR family transcriptional regulator [Streptomyces bun...
| 1055 | 1.2e-143 |
| WP_200696433.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 1048 | 1.5e-142 |
|
| 1046 | 2.5e-142 |
| WP_234432627.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 873 | 1.6e-116 |
| WP_171401865.1 | TetR/AcrR family transcriptional regulator [Streptomyces aso...
| 855 | 1.5e-113 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have an uncleavable N-term signal seq
|