| ID | SAVERM_2505
| Type | CDS
|
| From | 3055896
| nt length | 378
|
| To | 3055519
| aa length | 125
|
| Gene |
| pI | 6.77
|
| Definition | putative DNA-binding protein
| M.W (Da) | 13593
|
| Note | PF01381: Helix-turn-helix
| AseI frg. | Q
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5755 hypothetical protein | 191 | 3.0e-65
|
| sgr | SGR_1766 conserved hypothetical protein | 156 | 3.0e-51
|
| sam | SAM23877_5459 Transcriptional regulator ClgR | 194 | 2.0e-66
|
| scab | SCAB25071 putative DNA-binding protein | 234 | 3.0e-82
|
| sace | SACE_5879 hypothetical protein | 80 | 6.0e-21
|
| nfar | nfa38560 hypothetical protein | 110 | 3.6e-26
|
| mtub | gi|15609882 POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 91 | 1.4e-20
|
| cglu | gi|19553167 COG1396:Predicted transcriptional regulators [Corynebacterium glutamicum] | 73 | 3.6e-15
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HTH_31 | 1 | Helix-turn-helix domain | 8-65 | 43.3 | 3.3e-11
|
| HTH_3 | 1 | Helix-turn-helix | 12-66 | 38.7 | 7.2e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055511872.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 405 | 5.9e-49 |
| WP_161241744.1 | helix-turn-helix transcriptional regulator [Streptomyces sp....
| 403 | 1.3e-48 |
| WP_054228608.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 401 | 2.6e-48 |
| WP_028802355.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 401 | 2.6e-48 |
| WP_005481441.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 400 | 3.7e-48 |
| WP_149828339.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 398 | 5.9e-48 |
| WP_086752029.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 398 | 6.4e-48 |
| WP_037620346.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 395 | 1.7e-47 |
| WP_043444435.1 | helix-turn-helix transcriptional regulator [Streptomyces nod...
| 395 | 1.8e-47 |
| WP_148010798.1 | MULTISPECIES: helix-turn-helix transcriptional regulator [St...
| 395 | 2.1e-47 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.5358 | Seems to have no N-terminal signal seq.
|