| ID | SAVERM_2521
| Type | CDS
|
| From | 3085449
| nt length | 753
|
| To | 3084697
| aa length | 250
|
| Gene | dapB
| pI | 6.51
|
| Definition | putative dihydrodipicolinate reductase
| M.W (Da) | 26280
|
| Note | PF05173: Dihydrodipicolinate reductase, C-terminus
| AseI frg. | V
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5739 putative dihydrodipicolinate reductase | 442 | 2.0e-160
|
| sgr | SGR_1781 putative dihydrodipicolinate reductase | 433 | 6.0e-157
|
| sam | SAM23877_5441 4-hydroxy-tetrahydrodipicolinate reductase | 423 | 6.0e-153
|
| scab | SCAB25231 putative dihydrodipicolinate reductase | 449 | 5.0e-163
|
| sace | SACE_5912 dihydrodipicolinate reductase | 319 | 8.0e-112
|
| nfar | nfa38810 dapB dihydrodipicolinate reductase | 322 | 1.5e-89
|
| mtub | gi|15609910 dihydrodipicolinate reductase [Mycobacterium tuberculosis H37Rv] | 306 | 8.6e-85
|
| cglu | gi|19553177 COG0289:Dihydrodipicolinate reductase [Corynebacterium glutamicum] | 296 | 8.2e-82
|
| bsub | BG11207 dapB; dihydrodipicolinate reductase [EC:1.3.1.26] | 195 | 1.9e-51
|
| ecoli | gi|16128025 dihydrodipicolinate reductase [Escherichia coli K12] | 101 | 4.2e-23
|
| paer | PA4759 [gene=dapB] [prot=dihydrodipicolinate reductase] [comment=PA4759] | 90 | 1.0e-19
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DapB_C | 1 | Dihydrodipicolinate reductase, C-terminus | 111-247 | 94.0 | 5.8e-27
|
| DapB_N | 1 | Dihydrodipicolinate reductase, N-terminus | 5-108 | 85.2 | 3.5e-24
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_019527147.1 | MULTISPECIES: 4-hydroxy-tetrahydrodipicolinate reductase [un...
| 1244 | 8.0e-173 |
| WP_228920691.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces sp....
| 1244 | 1.0e-172 |
| WP_142231677.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces cal...
| 1244 | 1.0e-172 |
| WP_048460743.1 | MULTISPECIES: 4-hydroxy-tetrahydrodipicolinate reductase [St...
| 1243 | 1.3e-172 |
| WP_167744072.1 | MULTISPECIES: 4-hydroxy-tetrahydrodipicolinate reductase [St...
| 1242 | 1.6e-172 |
| WP_081236554.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces vir...
| 1241 | 2.3e-172 |
| GHE76524.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces cellulo...
| 1240 | 3.2e-172 |
| WP_184764224.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces alb...
| 1240 | 3.3e-172 |
| WP_210636994.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces sp....
| 1240 | 3.7e-172 |
| WP_189937043.1 | 4-hydroxy-tetrahydrodipicolinate reductase [Streptomyces aur...
| 1239 | 4.6e-172 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0700 | Seems to have no N-terminal signal seq.
|