| ID | SAVERM_2551
| Type | CDS
|
| From | 3132060
| nt length | 3141
|
| To | 3128920
| aa length | 1046
|
| Gene | infB
| pI | 10.02
|
| Definition | putative translation initiation factor IF-2
| M.W (Da) | 106883
|
| Note | PF00009: Elongation factor Tu GTP binding domain
| AseI frg. | V
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | initiation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5706 probable translational initiation factor | 130 | 2.0e-31
|
| sgr | SGR_1811 putative translation initiation factor IF-2 | 226 | 7.0e-62
|
| sam | SAM23877_5427 Translation initiation factor IF-2 | 1108 | 0.0e+00
|
| scab | SCAB25351 putative translation initiation factor IF-2 | 109 | 8.0e-25
|
| sace | SACE_5926 translation initiation factor IF-2 | 937 | 0.0e+00
|
| nfar | nfa40670 infB translation initiation factor IF-2 | 1199 | 0.0e+00
|
| mtub | gi|15609976 translation initiation factor IF-2 [Mycobacterium tuberculosis H37Rv] | 1001 | 0.0e+00
|
| cglu | gi|19553189 COG0532:Translation initiation factor 2 (GTPase) [Corynebacterium glutamicum] | 1068 | 0.0e+00
|
| bsub | BG10268 infB; translation initiation factor IF-2 | 586 | 2.0e-168
|
| ecoli | gi|16131060 translation initiation factor IF-2 [Escherichia coli K12] | 546 | 3.4e-156
|
| paer | PA4744 [gene=infB] [prot=translation initiation factor IF-2] [comment=PA4744] | 537 | 1.7e-153
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| IF-2 | 1 | Translation-initiation factor 2 | 831-936 | 117.7 | 2e-34
|
| GTP_EFTU | 1 | Elongation factor Tu GTP binding domain | 544-704 | 118.6 | 2.2e-34
|
| IF2_N | 2 | Translation initiation factor IF-2, N-terminal region | 1-51, 460-504 | 79.8 | 8.6e-23
|
| Ras | 1 | Ras family | 545-703 | 36.9 | 2.4e-09
|
| MMR_HSR1 | 1 | 50S ribosome-binding GTPase | 544-653 | 34.2 | 2e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237529300.1 | translation initiation factor IF-2 [Streptomyces sp. SID5469...
| 2994 | 0.0e+00 |
| WP_078655618.1 | translation initiation factor IF-2 [Streptomyces fulvoviolac...
| 2976 | 0.0e+00 |
| WP_212726853.1 | translation initiation factor IF-2 [Streptomyces mirabilis] ...
| 2974 | 0.0e+00 |
| WP_148010762.1 | translation initiation factor IF-2 [Streptomyces sp. me109] ...
| 2968 | 0.0e+00 |
| WP_217463341.1 | translation initiation factor IF-2 [Streptomyces sp. BV129] ...
| 2946 | 0.0e+00 |
| WP_161146552.1 | translation initiation factor IF-2, partial [Streptomyces sp...
| 2945 | 0.0e+00 |
| WP_150473014.1 | translation initiation factor IF-2 [Streptomyces galilaeus] ...
| 2940 | 0.0e+00 |
| WP_086772725.1 | translation initiation factor IF-2 [Streptomyces bobili]
| 2939 | 0.0e+00 |
| WP_213084255.1 | translation initiation factor IF-2 [Streptomyces phaeoluteig...
| 2939 | 0.0e+00 |
| WP_075031295.1 | translation initiation factor IF-2 [Streptomyces mirabilis]
| 2938 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1922 | Seems to have no N-terminal signal seq.
|