| ID | SAVERM_2554
| Type | CDS
|
| From | 3134114
| nt length | 510
|
| To | 3133605
| aa length | 169
|
| Gene |
| pI | 4.42
|
| Definition | hypothetical protein
| M.W (Da) | 18721
|
| Note | PF02576: Uncharacterised BCR, YhbC family COG0779
| AseI frg. | V
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5703 hypothetical protein | 271 | 3.0e-95
|
| sgr | SGR_1814 conserved hypothetical protein | 231 | 1.0e-79
|
| sam | SAM23877_5424 Ribosome maturation factor RimP | 273 | 4.0e-96
|
| scab | SCAB25381 hypothetical protein | 286 | 2.0e-101
|
| sace | SACE_5928 protein of unknown function DUF150 | 114 | 5.0e-33
|
| nfar | nfa40690 hypothetical protein | 100 | 8.6e-23
|
| mtub | gi|15609979 hypothetical protein Rv2842c [Mycobacterium tuberculosis H37Rv] | 79 | 1.2e-16
|
| cglu | gi|19553192 COG0779:Uncharacterized BCR [Corynebacterium glutamicum] | 78 | 1.9e-16
|
| bsub | BG10264 ylxS, ymxA; similar to unknown proteins | 80 | 6.4e-17
|
| ecoli | gi|49176321 hypothetical protein b3170 [Escherichia coli K12] | 63 | 7.0e-12
|
| paer | PA4746 [gene=PA4746] [prot=conserved hypothetical protein] [comment=PA4746] | 66 | 1.1e-12
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF150 | 1 | RimP N-terminal domain | 12-85 | 85.1 | 3e-24
|
| DUF150_C | 1 | RimP C-terminal SH3 domain | 88-155 | 49.4 | 3.5e-13
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_217234571.1 | ribosome maturation factor RimP [Streptomyces sp. AC555_RSS8...
| 764 | 2.5e-102 |
| WP_152894248.1 | ribosome maturation factor RimP [Streptomyces adustus] >gb
| 750 | 3.3e-100 |
| WP_006375277.1 | MULTISPECIES: ribosome maturation factor RimP [Streptomyces]...
| 749 | 5.6e-100 |
| WP_030041096.1 | ribosome maturation factor RimP [Streptomyces resistomycific...
| 748 | 8.0e-100 |
| WP_060906246.1 | MULTISPECIES: ribosome maturation factor RimP [Streptomyces]...
| 741 | 7.7e-99 |
| WP_055614794.1 | ribosome maturation factor RimP [Streptomyces phaeochromogen...
| 740 | 1.5e-98 |
| WP_189149845.1 | ribosome maturation factor RimP [Streptomyces lacrimiflumini...
| 740 | 1.6e-98 |
| WP_186287341.1 | ribosome maturation factor RimP [Streptomyces sp. PSKA01] >l...
| 739 | 1.7e-98 |
| WP_053753515.1 | ribosome maturation factor RimP [Streptomyces sp. MMG1533] >...
| 739 | 1.8e-98 |
| WP_093498776.1 | ribosome maturation factor RimP [Streptomyces sp. Ag109_O5-1...
| 739 | 1.9e-98 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2157 | Seems to have no N-terminal signal seq.
|