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IDSAVERM_2597 TypeCDS
From3193035 nt length1905
To3191131 aa length634
Genesig20 pI9.77
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)67092
NotePF04542: Sigma-70 region 2 AseI frg.J
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_4307 putative RNA polymerase ECF-subfamily sigma factor2676.0e-83
scabSCAB79551 putative RNA polymerase ECF-subfamily sigma factor2219.0e-68

*sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 2101-16754.95.1e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202497930.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 22530.0e+00
WP_189189106.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 16900.0e+00
GGN76671.1 hypothetical protein GCM10011579_058020 [Streptomyces albiflaves... 16890.0e+00
WP_128435212.1 sigma-70 family RNA polymerase sigma factor [Streptomyces cy... 16820.0e+00
WP_151481669.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 16660.0e+00
WP_236041919.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16580.0e+00
WP_147994055.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16530.0e+00
WP_103839937.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 16520.0e+00
WP_030602354.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fu... 16400.0e+00
NUP40776.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp.] 16340.0e+00

PSORT result

LocalizationCertaintyPSORT said
membrane0.1829 Seems to have no N-terminal signal seq.