| ID | SAVERM_2620
| Type | CDS
|
| From | 3220357
| nt length | 1086
|
| To | 3219272
| aa length | 361
|
| Gene | tbpA
| pI | 6.79
|
| Definition | putative ABC transporter substrate-binding protein
| M.W (Da) | 38511
|
| Note | thiamine transport system substrate-binding protein, PF01547: Bacterial extracellular solute-binding protein
| AseI frg. | J
|
| SignalP v.4.0 | Signal peptide | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5646 putative solute binding lipoprotein | 565 | 0.0e+00
|
| sgr | SGR_1857 putative ABC transporter substrate-binding protein | 497 | 5.0e-178
|
| sam | SAM23877_5375 Solute binding lipoprotein | 561 | 0.0e+00
|
| scab | SCAB25941 putative ABC transporter substrate-binding protein | 563 | 0.0e+00
|
| sace | SACE_0981 ABC transporter substrate-binding protein | 297 | 6.0e-100
|
| nfar | nfa22560 transporter | 45 | 7.6e-06
|
| ecoli | gi|16128062 thiamin-binding periplasmic protein [Escherichia coli K12] | 123 | 2.2e-29
|
| paer | PA4687 [gene=hitA] [prot=ferric iron-binding periplasmic protein HitA] [comment=PA4687] | 51 | 1.4e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SBP_bac_6 | 1 | Bacterial extracellular solute-binding protein | 86-324 | 79.8 | 1.8e-22
|
| SBP_bac_8 | 1 | Bacterial extracellular solute-binding protein | 54-328 | 55.7 | 6.1e-15
|
| SBP_bac_1 | 1 | Bacterial extracellular solute-binding protein | 51-304 | 41.9 | 1.1e-10
|
| SBP_bac_11 | 1 | Bacterial extracellular solute-binding protein | 48-304 | 35.5 | 8.1e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497934.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1658 | 0.0e+00 |
| WP_100571709.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1466 | 0.0e+00 |
| WP_189900596.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1465 | 0.0e+00 |
| WP_189189004.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1465 | 0.0e+00 |
| WP_030168189.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1462 | 0.0e+00 |
| WP_055493464.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1462 | 0.0e+00 |
| WP_030611755.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1461 | 0.0e+00 |
| WP_189709089.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1457 | 0.0e+00 |
| WP_143652222.1 | MULTISPECIES: thiamine ABC transporter substrate-binding pro...
| 1456 | 0.0e+00 |
| WP_143657154.1 | thiamine ABC transporter substrate-binding protein [Streptom...
| 1455 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | May be a lipoprotein
|