| ID | SAVERM_2624
| Type | CDS
|
| From | 3224363
| nt length | 558
|
| To | 3223806
| aa length | 185
|
| Gene | frr
| pI | 4.94
|
| Definition | putative ribosome recycling factor
| M.W (Da) | 20740
|
| Note | PF01765: Ribosome recycling factor
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | termination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5627 ribosome recycling factor | 355 | 8.0e-128
|
| sgr | SGR_1860 putative ribosome recycling factor | 323 | 2.0e-115
|
| sam | SAM23877_5367 ribosome recycling factor | 360 | 5.0e-130
|
| scab | SCAB25991 putative ribosome recycling factor | 355 | 4.0e-128
|
| sace | SACE_6035 ribosome recycling factor | 262 | 3.0e-91
|
| nfar | nfa41280 frr ribosome recycling factor | 248 | 1.8e-67
|
| mtub | gi|15610019 ribosome releasing factor [Mycobacterium tuberculosis H37Rv] | 240 | 4.9e-65
|
| cglu | gi|19553226 COG0233:Ribosome recycling factor [Corynebacterium glutamicum] | 226 | 6.7e-61
|
| bsub | BG12587 frr; ribosome recycling factor | 194 | 2.7e-51
|
| ecoli | gi|16128165 ribosome releasing factor [Escherichia coli K12] | 155 | 1.6e-39
|
| paer | PA3653 [gene=frr] [prot=ribosome recycling factor] [comment=PA3653] | 159 | 1.5e-40
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RRF | 1 | Ribosome recycling factor | 21-183 | 198.6 | 5.5e-59
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| GGN76478.1 | ribosome-recycling factor [Streptomyces albiflavescens] >dbj
| 712 | 7.1e-94 |
| MPY36950.1 | ribosome recycling factor [Streptomyces adustus]
| 712 | 8.0e-94 |
| WP_202919847.1 | ribosome recycling factor [Streptomyces adustus]
| 710 | 1.0e-93 |
| WP_202497935.1 | ribosome recycling factor [Streptomyces sp. SID5469]
| 709 | 1.5e-93 |
| GHD67542.1 | ribosome-recycling factor [Streptomyces mirabilis]
| 710 | 1.6e-93 |
| WP_067371376.1 | ribosome recycling factor [Streptomyces olivochromogenes] >g...
| 710 | 1.8e-93 |
| WP_054235439.1 | MULTISPECIES: ribosome recycling factor [Streptomyces] >gb
| 709 | 1.9e-93 |
| WP_033321128.1 | MULTISPECIES: ribosome recycling factor [Streptomyces] >gb
| 709 | 2.2e-93 |
| WP_190193406.1 | ribosome recycling factor [Streptomyces minutiscleroticus] >...
| 709 | 2.4e-93 |
| WP_030824850.1 | MULTISPECIES: ribosome recycling factor [Streptomyces]
| 708 | 2.6e-93 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2649 | Seems to have no N-terminal signal seq.
|