| ID | SAVERM_2626
| Type | CDS
|
| From | 3226312
| nt length | 837
|
| To | 3225476
| aa length | 278
|
| Gene | tsf
| pI | 5.16
|
| Definition | putative elongation factor EF-Ts
| M.W (Da) | 29777
|
| Note | PF00889: Elongation factor TS
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | elongation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5625 elongation factor Ts | 530 | 0.0e+00
|
| sgr | SGR_1862 putative elongation factor EF-Ts | 498 | 0.0e+00
|
| sam | SAM23877_5365 Elongation factor Ts | 530 | 0.0e+00
|
| scab | SCAB26011 putative elongation factor EF-Ts | 527 | 0.0e+00
|
| sace | SACE_6037 elongation factor EF1B | 279 | 4.0e-95
|
| nfar | nfa41300 tsf elongation factor EF-Ts | 281 | 5.8e-77
|
| mtub | gi|15610026 elongation factor Ts [Mycobacterium tuberculosis H37Rv] | 282 | 1.5e-77
|
| cglu | gi|19553228 COG0264:Translation elongation factor Ts [Corynebacterium glutamicum] | 245 | 1.5e-66
|
| bsub | BG19025 tsf; elongation factor Ts (EF-Ts) | 199 | 1.2e-52
|
| ecoli | gi|16128163 elongation factor Ts [Escherichia coli K12] | 175 | 3.4e-45
|
| paer | PA3655 [gene=tsf] [prot=elongation factor Ts] [comment=PA3655] | 152 | 3.3e-38
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| EF_TS | 1 | Elongation factor TS | 73-277 | 206.4 | 3.5e-61
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_210577495.1 | translation elongation factor Ts [Streptomyces sp. GESEQ-4]
| 1302 | 1.1e-180 |
| WP_210588116.1 | translation elongation factor Ts [Streptomyces sp. GESEQ-35]
| 1302 | 1.2e-180 |
| WP_184988768.1 | translation elongation factor Ts [Streptomyces caelestis] >l...
| 1300 | 2.3e-180 |
| WP_235074424.1 | translation elongation factor Ts [Streptomyces sp. FB2] >lcl...
| 1299 | 3.5e-180 |
| WP_175434995.1 | translation elongation factor Ts [Streptomyces hawaiiensis] ...
| 1298 | 4.2e-180 |
| WP_151786099.1 | translation elongation factor Ts [Streptomyces sp. SS1-1] >l...
| 1298 | 4.7e-180 |
| WP_221754475.1 | translation elongation factor Ts [Streptomyces sp. WAC04114]...
| 1298 | 5.2e-180 |
| WP_200698365.1 | translation elongation factor Ts [Streptomyces sp. MBT33] >l...
| 1297 | 7.3e-180 |
| WP_094055784.1 | translation elongation factor Ts [Streptomyces sp. XY006] >g...
| 1295 | 1.2e-179 |
| WP_033313135.1 | MULTISPECIES: translation elongation factor Ts [Streptomyces...
| 1295 | 1.3e-179 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3185 | Seems to have no N-terminal signal seq.
|