| ID | SAVERM_2640
| Type | CDS
|
| From | 3238391
| nt length | 351
|
| To | 3238041
| aa length | 116
|
| Gene | rplS
| pI | 11.49
|
| Definition | putative ribosomal protein L19
| M.W (Da) | 13186
|
| Note | PF01245: Ribosomal protein L19
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5595 50S ribosomal protein L19 | 227 | 2.0e-79
|
| sgr | SGR_1885 putative 50S ribosomal protein L19 | 208 | 4.0e-72
|
| sam | SAM23877_5351 50S ribosomal protein L19 | 227 | 1.0e-79
|
| scab | SCAB26151 putative ribosomal protein L19 | 227 | 2.0e-79
|
| sace | SACE_6049 50S ribosomal protein L19 | 186 | 1.0e-63
|
| nfar | nfa41470 rplS ribosomal protein L19 | 180 | 2.4e-47
|
| mtub | gi|15610041 50S ribosomal protein L19 [Mycobacterium tuberculosis H37Rv] | 175 | 6.2e-46
|
| cglu | gi|19553239 COG0335:Ribosomal protein L19 [Corynebacterium glutamicum] | 179 | 3.1e-47
|
| bsub | BG12667 rplS; 50S ribosomal protein L19 | 164 | 9.7e-43
|
| ecoli | gi|16130527 50S ribosomal protein L19 [Escherichia coli K12] | 124 | 2.1e-30
|
| paer | PA3742 [gene=rplS] [prot=50S ribosomal protein L19] [comment=PA3742] | 126 | 5.5e-31
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L19 | 1 | Ribosomal protein L19 | 4-113 | 165.0 | 4.2e-49
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_079309735.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >gb
| 585 | 9.9e-77 |
| ELS56844.1 | putative 50S ribosomal protein L19 [Streptomyces viridochromogene...
| 583 | 2.7e-76 |
| WP_030612790.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >lcl
| 582 | 2.7e-76 |
| WP_234847506.1 | 50S ribosomal protein L19 [Streptomyces indiaensis] >lcl
| 582 | 3.0e-76 |
| WP_030231630.1 | MULTISPECIES: 50S ribosomal protein L19 [unclassified Strept...
| 582 | 3.1e-76 |
| WP_016432403.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >lcl
| 582 | 3.2e-76 |
| WP_053848457.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >gb
| 582 | 3.3e-76 |
| WP_059198033.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >gb
| 582 | 3.4e-76 |
| WP_030675924.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >gb
| 582 | 3.4e-76 |
| WP_004924850.1 | MULTISPECIES: 50S ribosomal protein L19 [Streptomyces] >dbj
| 581 | 3.8e-76 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3572 | Seems to have no N-terminal signal seq.
|