| ID | SAVERM_2642
| Type | CDS
|
| From | 3239935
| nt length | 561
|
| To | 3239375
| aa length | 186
|
| Gene | rimM
| pI | 3.96
|
| Definition | putative 16S rRNA processing protein
| M.W (Da) | 20332
|
| Note | PF01782: RimM N-terminal domain
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5593 hypothetical protein | 306 | 1.0e-108
|
| sgr | SGR_1887 putative 16S rRNA processing protein | 276 | 8.0e-97
|
| sam | SAM23877_5349 Ribosome maturation factor RimM | 295 | 3.0e-104
|
| scab | SCAB26171 putative 16S rRNA processing protein | 291 | 1.0e-102
|
| sace | SACE_6051 16S rRNA processing protein | 149 | 1.0e-46
|
| nfar | nfa41550 rimM 16S rRNA processing protein | 142 | 1.8e-35
|
| mtub | gi|15610044 16S rRNA-processing protein [Mycobacterium tuberculosis H37Rv] | 138 | 2.0e-34
|
| cglu | gi|19553253 COG0806:RimM protein, required for 16S rRNA processing [Corynebacterium glutamicum] | 131 | 1.7e-32
|
| bsub | BG13404 rimM, ylqE; 16S rRNA processing protein | 91 | 3.2e-20
|
| ecoli | gi|49176244 16S rRNA-processing protein [Escherichia coli K12] | 63 | 6.3e-12
|
| paer | PA3744 [gene=rimM] [prot=16S rRNA processing protein] [comment=PA3744] | 50 | 7.4e-08
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RimM | 1 | RimM N-terminal domain | 5-83 | 80.0 | 1e-22
|
| PRC | 1 | PRC-barrel domain | 93-166 | 40.5 | 2e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497938.1 | ribosome maturation factor RimM [Streptomyces sp. SID5469]
| 770 | 1.1e-102 |
| WP_135334709.1 | ribosome maturation factor RimM [Streptomyces sp. MZ04] >lcl...
| 711 | 1.4e-93 |
| WP_230902994.1 | ribosome maturation factor RimM [Streptomyces huasconensis] ...
| 712 | 1.7e-93 |
| WP_205034882.1 | ribosome maturation factor RimM [Streptomyces sp. G44] >lcl
| 708 | 6.5e-93 |
| WP_060901211.1 | ribosome maturation factor RimM [Streptomyces sp. WAC00263] ...
| 706 | 1.1e-92 |
| WP_189843566.1 | ribosome maturation factor RimM [Streptomyces umbrinus] >dbj...
| 705 | 1.2e-92 |
| WP_189315371.1 | ribosome maturation factor RimM [Streptomyces brasiliensis] ...
| 703 | 1.4e-92 |
| WP_125515358.1 | ribosome maturation factor RimM [Streptomyces sp. WAC 01529]...
| 705 | 1.5e-92 |
| WP_098245045.1 | ribosome maturation factor RimM [Streptomyces formicae] >gb
| 702 | 2.3e-92 |
| WP_055552798.1 | ribosome maturation factor RimM [Streptomyces kanamyceticus]...
| 703 | 2.8e-92 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2910 | Seems to have no N-terminal signal seq.
|