| ID | SAVERM_2644
| Type | CDS
|
| From | 3240714
| nt length | 429
|
| To | 3240286
| aa length | 142
|
| Gene | rpsP
| pI | 10.1
|
| Definition | putative ribosomal protein S16
| M.W (Da) | 15405
|
| Note | PF00886: Ribosomal protein S16
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5591 30S ribosomal protein S16 | 220 | 5.0e-76
|
| sgr | SGR_1889 putative 30S ribosomal protein S16 | 191 | 2.0e-64
|
| sam | SAM23877_5347 30S ribosomal protein S16 | 226 | 2.0e-78
|
| scab | SCAB26191 putative ribosomal protein S16 | 226 | 2.0e-78
|
| sace | SACE_6053 30S ribosomal protein S16 | 152 | 3.0e-49
|
| nfar | nfa41570 rpsP ribosomal protein S16 | 160 | 3.1e-41
|
| mtub | gi|15610046 30S ribosomal protein S16 [Mycobacterium tuberculosis H37Rv] | 149 | 9.4e-38
|
| cglu | gi|19553255 COG0228:Ribosomal protein S16 [Corynebacterium glutamicum] | 149 | 4.0e-38
|
| bsub | BG10831 rpsP; 30S ribosomal protein S16 | 88 | 1.7e-19
|
| ecoli | gi|16130530 30S ribosomal protein S16 [Escherichia coli K12] | 63 | 3.9e-12
|
| paer | PA3745 [gene=rpsP] [prot=30S ribosomal protein S16] [comment=PA3745] | 71 | 3.3e-14
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S16 | 1 | Ribosomal protein S16 | 9-67 | 82.9 | 1.1e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099502622.1 | MULTISPECIES: 30S ribosomal protein S16 [Streptomyces] >gb
| 546 | 6.3e-70 |
| WP_138049237.1 | 30S ribosomal protein S16 [Streptomyces montanus] >lcl
| 543 | 1.9e-69 |
| WP_030041014.1 | 30S ribosomal protein S16 [Streptomyces resistomycificus] >g...
| 542 | 2.5e-69 |
| WP_046590192.1 | 30S ribosomal protein S16 [Streptomyces mangrovisoli] >gb
| 539 | 5.6e-69 |
|
| 538 | 1.0e-68 |
| WP_119104650.1 | 30S ribosomal protein S16 [Streptomyces sporangiiformans] >l...
| 538 | 1.0e-68 |
| WP_067274523.1 | 30S ribosomal protein S16 [Streptomyces jeddahensis] >gb
| 538 | 1.1e-68 |
| WP_190193420.1 | 30S ribosomal protein S16 [Streptomyces minutiscleroticus] >...
| 537 | 1.4e-68 |
| WP_128380946.1 | 30S ribosomal protein S16 [Streptomyces cavernae]
| 537 | 1.7e-68 |
| WP_210588101.1 | 30S ribosomal protein S16 [Streptomyces sp. GESEQ-35]
| 536 | 1.7e-68 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3198 | Seems to have no N-terminal signal seq.
|