| ID | SAVERM_2658
| Type | CDS
|
| From | 3262502
| nt length | 3609
|
| To | 3258894
| aa length | 1202
|
| Gene | smc
| pI | 5.2
|
| Definition | putative chromosome segregation protein
| M.W (Da) | 130717
|
| Note | PF02483: SMC family, C-terminal domain
| AseI frg. | J
|
| SignalP v.4.0 | Signal peptide | plot
| Category | DNA packaging & segregation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5577 putative chromosome associated protein | 1808 | 0.0e+00
|
| sgr | SGR_1901 putative chromosome segregation protein | 1718 | 0.0e+00
|
| sam | SAM23877_5332 Chromosome partition protein Smc | 1784 | 0.0e+00
|
| scab | SCAB26331 putative chromosome segregation protein | 1801 | 0.0e+00
|
| sace | SACE_6071 chromosome segregation ATPase | 1074 | 0.0e+00
|
| nfar | nfa41670 chromosome segregation protein | 1141 | 0.0e+00
|
| mtub | gi|57117036 PROBABLE CHROMOSOME PARTITION PROTEIN SMC [Mycobacterium tuberculosis H37Rv] | 1081 | 0.0e+00
|
| cglu | gi|19553265 COG1196:Chromosome segregation ATPases [Corynebacterium glutamicum] | 864 | 0.0e+00
|
| bsub | BG11538 smc, ylqA; chromosome segregation SMC protein | 513 | 3.3e-146
|
| paer | PA1527 [gene=PA1527] [prot=conserved hypothetical protein] [comment=PA1527] | 420 | 3.5e-118
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SMC_N | 1 | RecF/RecN/SMC N terminal domain | 3-1194 | 241.2 | 7.8e-72
|
| SMC_hinge | 1 | SMC proteins Flexible Hinge Domain | 513-640 | 88.3 | 4e-25
|
| AAA_21 | 2 | AAA domain, putative AbiEii toxin, Type IV TA system | 26-83, 1108-1173 | 64.9 | 9.4e-18
|
| AAA_15 | 1 | AAA ATPase domain | 1-49 | 49.6 | 4.1e-13
|
| AAA_23 | 1 | AAA domain | 6-248 | 47.2 | 3.3e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237528785.1 | chromosome segregation protein SMC [Streptomyces sp. SID5469...
| 2075 | 0.0e+00 |
| WP_095936901.1 | chromosome segregation protein SMC [Streptomyces sp. Tue6028...
| 1859 | 0.0e+00 |
| WP_028802435.1 | chromosome segregation protein SMC [Streptomyces sp. 142MFCo...
| 1838 | 0.0e+00 |
| NGO08640.1 | chromosome segregation protein SMC [Streptomyces scabichelini]
| 1836 | 0.0e+00 |
| NGO41408.1 | chromosome segregation protein SMC [Streptomyces ureilyticus]
| 1835 | 0.0e+00 |
| WP_189874797.1 | chromosome segregation protein SMC [Streptomyces bluensis] >...
| 1834 | 0.0e+00 |
| WP_189320456.1 | chromosome segregation protein SMC [Streptomyces flaveus] >d...
| 1830 | 0.0e+00 |
|
| 1826 | 0.0e+00 |
| NEB34067.1 | chromosome segregation protein SMC [Streptomyces sp. SID14446]
| 1826 | 0.0e+00 |
| WP_081219645.1 | chromosome segregation protein SMC [Streptomyces sp. M41(201...
| 1821 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1659 | Seems to have no N-terminal signal seq.
|