| ID | SAVERM_2664
| Type | CDS
|
| From | 3268270
| nt length | 861
|
| To | 3267410
| aa length | 286
|
| Gene | mutM1
| pI | 9.88
|
| Definition | putative formamidopyrimidine-DNA glycosylase
| M.W (Da) | 32330
|
| Note | PF01149: Formamidopyrimidine-DNA glycosylase N-terminal domain
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5573 formamidopyrimidine-DNA glycosylase | 531 | 0.0e+00
|
| sgr | SGR_1907 putative formamidopyrimidine-DNA glycosylase | 479 | 6.0e-174
|
| sam | SAM23877_5326 Formamidopyrimidine-DNA glycosylase | 528 | 0.0e+00
|
| scab | SCAB26381 putative formamidopyrimidine-DNA glycosylase | 531 | 0.0e+00
|
| sace | SACE_6099 formamidopyrimidine-DNA glycosylase | 355 | 7.0e-125
|
| nfar | nfa41830 mutM formamidopyrimidine-DNA glycosylase | 319 | 2.0e-88
|
| mtub | gi|15610061 formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis H37Rv] | 311 | 3.2e-86
|
| cglu | gi|19553271 COG0266:Formamidopyrimidine-DNA glycosylase [Corynebacterium glutamicum] | 259 | 7.8e-71
|
| bsub | BG12628 mutM, ytaE; formamidopyrimidine-DNA glycosidase [EC:3.2.2.23] | 150 | 1.1e-37
|
| ecoli | gi|16131506 formamidopyrimidine-DNA glycosylase [Escherichia coli K12] | 148 | 4.7e-37
|
| paer | PA0357 [gene=mutM] [prot=formamidopyrimidine-DNA glycosylase] [comment=PA0357] | 142 | 2.7e-35
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Fapy_DNA_glyco | 1 | Formamidopyrimidine-DNA glycosylase N-terminal domain | 1-121 | 111.3 | 3.7e-32
|
| H2TH | 1 | Formamidopyrimidine-DNA glycosylase H2TH domain | 139-226 | 79.2 | 1.7e-22
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_188289109.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1394 | 0.0e+00 |
|
| 1393 | 0.0e+00 |
| NUO41765.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or...
| 1391 | 0.0e+00 |
| WP_126902142.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1387 | 0.0e+00 |
| WP_230220721.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1387 | 0.0e+00 |
| WP_152893528.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1386 | 0.0e+00 |
| NUT30531.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or...
| 1385 | 0.0e+00 |
| WP_067301295.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1385 | 0.0e+00 |
| WP_220646349.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1385 | 0.0e+00 |
| WP_107464568.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurin...
| 1384 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2449 | Seems to have no N-terminal signal seq.
|