| ID | SAVERM_2665
| Type | CDS
|
| From | 3269161
| nt length | 831
|
| To | 3268331
| aa length | 276
|
| Gene | rnc
| pI | 5.09
|
| Definition | putative ribonuclease III
| M.W (Da) | 28923
|
| Note | PF00636: RNase3 domain
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5572 ribonuclease III | 458 | 7.0e-166
|
| sgr | SGR_1908 putative ribonuclease III | 422 | 1.0e-151
|
| sam | SAM23877_5325 Ribonuclease 3 | 418 | 9.0e-150
|
| scab | SCAB26391 putative ribonuclease III | 448 | 7.0e-162
|
| sace | SACE_6100 ribonuclease III | 246 | 9.0e-83
|
| nfar | nfa41840 rnc RNase III | 274 | 7.0e-75
|
| mtub | gi|15610062 ribonuclease III [Mycobacterium tuberculosis H37Rv] | 274 | 4.1e-75
|
| cglu | gi|19553272 COG0571:dsRNA-specific ribonuclease [Corynebacterium glutamicum] | 200 | 7.0e-53
|
| bsub | BG11537 rncS, rnc; ribonuclease III [EC:3.1.26.3] | 155 | 1.9e-39
|
| ecoli | gi|16130492 ribonuclease III [Escherichia coli K12] | 148 | 4.4e-37
|
| paer | PA0770 [gene=rnc] [prot=ribonuclease III] [comment=PA0770] | 152 | 2.5e-38
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribonucleas_3_3 | 1 | Ribonuclease-III-like | 34-159 | 131.2 | 2.2e-38
|
| Ribonuclease_3 | 1 | Ribonuclease III domain | 57-147 | 86.5 | 1.5e-24
|
| dsrm | 1 | Double-stranded RNA binding motif | 175-238 | 62.5 | 4.2e-17
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2790 | Seems to have no N-terminal signal seq.
|