| ID | SAVERM_2671
| Type | CDS
|
| From | 3275752
| nt length | 3228
|
| To | 3272525
| aa length | 1075
|
| Gene | recG
| pI | 6.77
|
| Definition | putative ATP-dependent DNA helicase
| M.W (Da) | 117088
|
| Note | PF00271: Helicase conserved C-terminal domain
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5566 putative ATP-dependent DNA helicase | 769 | 0.0e+00
|
| sgr | SGR_1914 putative ATP-dependent DNA helicase | 733 | 0.0e+00
|
| sam | SAM23877_5320 ATP-dependent DNA helicase RecG | 727 | 0.0e+00
|
| scab | SCAB26441 putative ATP-dependent DNA helicase | 759 | 0.0e+00
|
| sace | SACE_6119 putative ATP-dependent DNA helicase | 565 | 0.0e+00
|
| nfar | nfa41940 recG ATP-dependent DNA helicase | 517 | 2.3e-147
|
| mtub | gi|15610110 PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium tuberculosis H37Rv] | 427 | 1.4e-120
|
| cglu | gi|19552544 COG1200:RecG-like helicases [Corynebacterium glutamicum] | 393 | 2.7e-110
|
| bsub | BG13399 recG, ylpB; ATP-dependent DNA helicase [EC:3.6.1.-] | 300 | 3.9e-82
|
| ecoli | gi|16131523 DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Escherichia coli K12] | 265 | 1.6e-71
|
| paer | PA5345 [gene=recG] [prot=ATP-dependent DNA helicase RecG] [comment=PA5345] | 273 | 6.1e-74
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 890-962 | 71.8 | 5.3e-20
|
| tRNA_anti-codon | 1 | OB-fold nucleic acid binding domain | 61-144 | 41.7 | 8.1e-11
|
| DEAD | 1 | DEAD/DEAH box helicase | 649-789 | 40.0 | 3.2e-10
|
| RecG_wedge | 1 | RecG wedge domain | 13-185 | 33.4 | 2.8e-08
|
| LAGLIDADG_3 | 1 | LAGLIDADG-like domain | 529-572 | 25.6 | 1.1e-05
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3335 | Seems to have no N-terminal signal seq.
|