| ID | SAVERM_2684
| Type | CDS
|
| From | 3290308
| nt length | 654
|
| To | 3289655
| aa length | 217
|
| Gene | hupB
| pI | 11.97
|
| Definition | putative histone-like DNA-binding protein
| M.W (Da) | 22266
|
| Note | PF00216: Bacterial DNA-binding protein
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA packaging & segregation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5556 histone-like DNA binding protein | 213 | 1.0e-70
|
| sgr | SGR_1926 putative histone-like DNA-binding protein | 221 | 7.0e-74
|
| sam | SAM23877_5309 DNA-binding protein HU 2 | 213 | 5.0e-71
|
| scab | SCAB26581 putative histone-like DNA-binding protein | 227 | 3.0e-76
|
| sace | SACE_6142 histone-like DNA binding protein | 102 | 1.0e-27
|
| nfar | nfa42100 histone-like DNA-binding protein | 182 | 1.5e-47
|
| mtub | gi|15610123 PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) [Mycobacterium tuberculosis H37Rv] | 170 | 6.0e-44
|
| bsub | BG10276 hbs, dbpA, hbsU; non-specific DNA-binding protein HBsu | 82 | 1.9e-17
|
| ecoli | gi|16128425 DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli K12] | 72 | 1.7e-14
|
| paer | PA1804 [gene=hupB] [prot=DNA-binding protein HU] [comment=PA1804] | 72 | 3.0e-14
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Bac_DNA_binding | 1 | Bacterial DNA-binding protein | 1-88 | 82.2 | 2.1e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_037843104.1 | HU family DNA-binding protein, partial [Streptomyces sp. NRR...
| 446 | 1.0e-53 |
| WP_142213447.1 | HU family DNA-binding protein [Streptomyces sp. SLBN-118]
| 453 | 1.3e-53 |
| WP_108152807.1 | HU family DNA-binding protein [Streptomyces lunaelactis] >gb...
| 452 | 2.0e-53 |
| NUK08468.1 | HU family DNA-binding protein [Streptomyces lunaelactis] >gb
| 452 | 2.0e-53 |
| WP_189188944.1 | HU family DNA-binding protein [Streptomyces albiflavescens] ...
| 452 | 2.1e-53 |
| WP_099502658.1 | MULTISPECIES: HU family DNA-binding protein [Streptomyces] >...
| 451 | 2.2e-53 |
| WP_152171895.1 | HU family DNA-binding protein [Streptomyces phaeolivaceus] >...
| 452 | 2.3e-53 |
| NUJ99740.1 | HU family DNA-binding protein [Streptomyces lunaelactis] >gb
| 452 | 2.5e-53 |
| NUK39942.1 | HU family DNA-binding protein [Streptomyces lunaelactis]
| 452 | 2.5e-53 |
| NEA68733.1 | HU family DNA-binding protein [Streptomyces sp. SID12488]
| 452 | 2.5e-53 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2647 | Seems to have no N-terminal signal seq.
|