| ID | SAVERM_2775
| Type | CDS
|
| From | 3403925
| nt length | 1263
|
| To | 3405187
| aa length | 420
|
| Gene | glyA1
| pI | 6.16
|
| Definition | putative serine hydroxymethyltransferase
| M.W (Da) | 44979
|
| Note | PF00464: Serine hydroxymethyltransferase
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5470 serine hydroxymethyltransferase | 727 | 0.0e+00
|
| sgr | SGR_2047 putative serine hydroxymethyltransferase | 738 | 0.0e+00
|
| sam | SAM23877_5207 serine hydroxymethyltransferase | 724 | 0.0e+00
|
| scab | SCAB27491 putative serine hydroxymethyltransferase | 724 | 0.0e+00
|
| sace | SACE_4495 serine hydroxymethyltransferase | 644 | 0.0e+00
|
| nfar | nfa48130 glyA serine hydroxymethyltransferase | 597 | 6.2e-172
|
| mtub | gi|15607212 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) [Mycobacterium tuberculosis H37Rv] | 602 | 1.5e-173
|
| cglu | gi|19552219 COG0112:Glycine hydroxymethyltransferase [Corynebacterium glutamicum] | 596 | 7.4e-172
|
| bsub | BG10944 glyA, glyC, ipc-34d; serine hydroxymethyltransferase [EC:2.1.2.1] | 487 | 6.0e-139
|
| ecoli | gi|16130476 serine hydroxymethyltransferase [Escherichia coli K12] | 469 | 1.9e-133
|
| paer | PA5415 [gene=glyA1] [prot=serine hydroxymethyltransferase] [comment=PA5415] | 471 | 7.0e-134
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SHMT | 1 | Serine hydroxymethyltransferase | 9-389 | 550.1 | 2.1e-165
|
| Aminotran_1_2 | 1 | Aminotransferase class I and II | 65-369 | 41.9 | 6.5e-11
|
| Beta_elim_lyase | 1 | Beta-eliminating lyase | 79-350 | 30.3 | 2.2e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_097286330.1 | serine hydroxymethyltransferase [Streptomyces sp. OK228] >em...
| 1893 | 0.0e+00 |
| WP_189188850.1 | serine hydroxymethyltransferase [Streptomyces albiflavescens...
| 1890 | 0.0e+00 |
| WP_054234611.1 | MULTISPECIES: serine hydroxymethyltransferase [Streptomyces]...
| 1889 | 0.0e+00 |
| WP_095936787.1 | serine hydroxymethyltransferase [Streptomyces sp. Tue6028] >...
| 1888 | 0.0e+00 |
| WP_153288494.1 | serine hydroxymethyltransferase [Streptomyces fagopyri] >gb
| 1880 | 0.0e+00 |
| WP_081219541.1 | MULTISPECIES: serine hydroxymethyltransferase [unclassified ...
| 1872 | 0.0e+00 |
| WP_138046851.1 | serine hydroxymethyltransferase [Streptomyces montanus] >lcl...
| 1869 | 0.0e+00 |
| WP_119106431.1 | serine hydroxymethyltransferase [Streptomyces sporangiiforma...
| 1867 | 0.0e+00 |
| WP_028805313.1 | serine hydroxymethyltransferase [Streptomyces sp. 142MFCol3....
| 1867 | 0.0e+00 |
| WP_031135231.1 | MULTISPECIES: serine hydroxymethyltransferase [Streptomyces]...
| 1866 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1835 | Seems to have no N-terminal signal seq.
|