| ID | SAVERM_2880
| Type | CDS
|
| From | 3525834
| nt length | 375
|
| To | 3525460
| aa length | 124
|
| Gene | atpC
| pI | 4.54
|
| Definition | putative F-type proton-transporting ATPase epsilon chain
| M.W (Da) | 13128
|
| Note | PF02823: ATP synthase, Delta/Epsilon chain, beta-sandwich domain
| AseI frg. | K
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5374 atpC ATP synthase epsilon chain | 217 | 2.0e-75
|
| sgr | SGR_2162 putative ATP synthase epsilon chain | 194 | 2.0e-66
|
| sam | SAM23877_5120 ATP synthase epsilon chain | 224 | 4.0e-78
|
| scab | SCAB28751 putative F-type proton-transporting ATPase epsilon chain | 203 | 6.0e-70
|
| sace | SACE_6279 ATP synthase epsilon chain | 114 | 9.0e-35
|
| nfar | nfa10660 atpC ATP synthase epsilon subunit | 105 | 1.5e-24
|
| mtub | gi|15608451 ATP synthase subunit epsilon [Mycobacterium tuberculosis H37Rv] | 85 | 9.7e-19
|
| cglu | gi|19552436 COG0355:F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit) [Corynebacterium glutamicum] | 104 | 1.5e-24
|
| bsub | BG10822 atpC; ATP synthase epsilon chain [EC:3.6.1.34] | 80 | 2.1e-17
|
| ecoli | gi|16131599 ATP synthase subunit epsilon [Escherichia coli K12] | 57 | 2.2e-10
|
| paer | PA5553 [gene=atpC] [prot=ATP synthase epsilon chain] [comment=PA5553] | 73 | 3.8e-15
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ATP-synt_DE_N | 1 | ATP synthase, Delta/Epsilon chain, beta-sandwich domain | 5-83 | 88.0 | 2.7e-25
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099499944.1 | MULTISPECIES: F0F1 ATP synthase subunit epsilon [Streptomyce...
| 453 | 2.1e-56 |
| WP_089098753.1 | F0F1 ATP synthase subunit epsilon [Streptomyces hyaluromycin...
| 449 | 9.5e-56 |
| WP_181805896.1 | MULTISPECIES: F0F1 ATP synthase subunit epsilon [unclassifie...
| 449 | 9.7e-56 |
| WP_189268499.1 | MULTISPECIES: F0F1 ATP synthase subunit epsilon [Streptomyce...
| 449 | 1.2e-55 |
| WP_166021178.1 | F0F1 ATP synthase subunit epsilon [Streptomyces chilikensis]
| 447 | 1.8e-55 |
| WP_189795638.1 | F0F1 ATP synthase subunit epsilon [Streptomyces thermodiasta...
| 447 | 1.9e-55 |
| WP_108954355.1 | F0F1 ATP synthase subunit epsilon [Streptomyces fragilis]
| 447 | 2.4e-55 |
| WP_189189172.1 | F0F1 ATP synthase subunit epsilon [Streptomyces albiflavesce...
| 445 | 3.9e-55 |
| WP_168530269.1 | F0F1 ATP synthase subunit epsilon [Streptomyces sp. RPA4-2] ...
| 445 | 4.3e-55 |
| WP_053745188.1 | F0F1 ATP synthase subunit epsilon [Streptomyces sp. NRRL WC-...
| 445 | 4.6e-55 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2105 | Seems to have no N-terminal signal seq.
|