| ID | SAVERM_2881
| Type | CDS
|
| From | 3527381
| nt length | 1437
|
| To | 3525945
| aa length | 478
|
| Gene | atpD
| pI | 4.54
|
| Definition | putative F-type proton-transporting ATPase beta chain
| M.W (Da) | 52173
|
| Note | PF00006: ATP synthase alpha/beta family, nucleotide-binding domain
| AseI frg. | K
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5373 atpD ATP synthase beta chain | 910 | 0.0e+00
|
| sgr | SGR_2163 putative ATP synthase beta chain | 854 | 0.0e+00
|
| sam | SAM23877_5119 membrane-bound ATP synthase, F1 sector, beta-subunit | 924 | 0.0e+00
|
| scab | SCAB28761 putative F-type proton-transporting ATPase beta chain | 912 | 0.0e+00
|
| sace | SACE_6280 ATP synthase beta chain | 684 | 0.0e+00
|
| nfar | nfa10650 atpD ATP synthase beta subunit | 660 | 0.0e+00
|
| mtub | gi|15608450 ATP synthase subunit B [Mycobacterium tuberculosis H37Rv] | 641 | 0.0e+00
|
| cglu | gi|19552435 COG0055:F0F1-type ATP synthase beta subunit [Corynebacterium glutamicum] | 637 | 0.0e+00
|
| bsub | BG10821 atpD; ATP synthase beta chain [EC:3.6.1.34] | 610 | 5.5e-176
|
| ecoli | gi|16131600 ATP synthase subunit B [Escherichia coli K12] | 565 | 3.0e-162
|
| paer | PA5554 [gene=atpD] [prot=ATP synthase beta chain] [comment=PA5554] | 555 | 2.5e-159
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ATP-synt_ab | 1 | ATP synthase alpha/beta family, nucleotide-binding domain | 144-357 | 219.2 | 4.5e-65
|
| ATP-synt_ab_N | 1 | ATP synthase alpha/beta family, beta-barrel domain | 14-88 | 82.8 | 1.7e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_081219454.1 | F0F1 ATP synthase subunit beta [Streptomyces sp. M41(2017)] ...
| 2374 | 0.0e+00 |
| WP_028804230.1 | F0F1 ATP synthase subunit beta [Streptomyces sp. 142MFCol3.1...
| 2371 | 0.0e+00 |
| WP_148010485.1 | F0F1 ATP synthase subunit beta [Streptomyces sp. me109] >lcl...
| 2370 | 0.0e+00 |
| WP_164371798.1 | F0F1 ATP synthase subunit beta [Streptomyces sp. SID14446] >...
| 2370 | 0.0e+00 |
| WP_189189173.1 | F0F1 ATP synthase subunit beta [Streptomyces albiflavescens]...
| 2370 | 0.0e+00 |
| WP_054233221.1 | MULTISPECIES: F0F1 ATP synthase subunit beta [Streptomyces] ...
| 2369 | 0.0e+00 |
| WP_095852573.1 | MULTISPECIES: F0F1 ATP synthase subunit beta [unclassified S...
| 2367 | 0.0e+00 |
| WP_168495594.1 | F0F1 ATP synthase subunit beta [Streptomyces sp. RLB1-33] >g...
| 2367 | 0.0e+00 |
| WP_095936679.1 | F0F1 ATP synthase subunit beta [Streptomyces sp. Tue6028] >g...
| 2365 | 0.0e+00 |
| WP_153288574.1 | MULTISPECIES: F0F1 ATP synthase subunit beta [Streptomyces] ...
| 2364 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0347 | Seems to have no N-terminal signal seq.
|