| ID | SAVERM_2915
| Type | CDS
|
| From | 3648401
| nt length | 2067
|
| To | 3646335
| aa length | 688
|
| Gene | rho1
| pI | 9.51
|
| Definition | putative transcription termination factor Rho
| M.W (Da) | 74323
|
| Note | PF00006: ATP synthase alpha/beta family, nucleotide-binding domain
| AseI frg. | K
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA termination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5357 SCBAC5H2.26 rho transcription terminator factor (fragment) | 934 | 0.0e+00
|
| sgr | SGR_2179 putative transcription termination factor Rho | 766 | 0.0e+00
|
| sam | SAM23877_5101 putative transcription termination factor Rho | 780 | 0.0e+00
|
| scab | SCAB28931 putative transcription termination factor Rho | 778 | 0.0e+00
|
| sace | SACE_6295 putative transcription termination factor Rho | 675 | 0.0e+00
|
| nfar | nfa10520 rho transcription termination factor Rho | 687 | 0.0e+00
|
| mtub | gi|15608437 transcription termination factor Rho [Mycobacterium tuberculosis H37Rv] | 637 | 0.0e+00
|
| cglu | gi|19552423 COG1158:Transcription termination factor [Corynebacterium glutamicum] | 596 | 1.3e-171
|
| bsub | BG10416 rho; transcription termination factor | 411 | 7.4e-116
|
| ecoli | gi|16131639 transcription termination factor Rho [Escherichia coli K12] | 423 | 1.6e-119
|
| paer | PA5239 [gene=rho] [prot=transcription termination factor Rho] [comment=PA5239] | 443 | 2.1e-125
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Rho_RNA_bind | 1 | Rho termination factor, RNA-binding domain | 314-388 | 103.4 | 4e-30
|
| ATP-synt_ab | 1 | ATP synthase alpha/beta family, nucleotide-binding domain | 419-623 | 74.8 | 6.9e-21
|
| Rho_N | 1 | Rho termination factor, N-terminal domain | 40-78 | 45.8 | 3.8e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497988.1 | transcription termination factor Rho [Streptomyces sp. SID54...
| 2059 | 0.0e+00 |
| WP_210889796.1 | transcription termination factor Rho [Streptomyces sp. BH-SS...
| 2045 | 0.0e+00 |
| WP_223776772.1 | transcription termination factor Rho [Streptomyces sp. 135]
| 2044 | 0.0e+00 |
| WP_189773481.1 | transcription termination factor Rho [Streptomyces tauricus]...
| 2043 | 0.0e+00 |
| WP_107021307.1 | transcription termination factor Rho [Streptomyces dioscori]...
| 2043 | 0.0e+00 |
| WP_149511532.1 | transcription termination factor Rho [Streptomyces apricus] ...
| 2043 | 0.0e+00 |
| WP_221348042.1 | transcription termination factor Rho [Streptomyces sp. REN17...
| 2040 | 0.0e+00 |
| WP_150186227.1 | transcription termination factor Rho [Streptomyces venezuela...
| 2040 | 0.0e+00 |
| WP_189837652.1 | transcription termination factor Rho [Streptomyces umbrinus]...
| 2040 | 0.0e+00 |
| WP_190232152.1 | transcription termination factor Rho [Streptomyces umbrinus]...
| 2039 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2840 | Seems to have no N-terminal signal seq.
|