| ID | SAVERM_2919
| Type | CDS
|
| From | 3653978
| nt length | 1392
|
| To | 3652587
| aa length | 463
|
| Gene | lysA1
| pI | 5.16
|
| Definition | putative diaminopimelate decarboxylase
| M.W (Da) | 49886
|
| Note | PF02784: Pyridoxal-dependent decarboxylase, pyridoxal binding domain
| AseI frg. | K
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5353 lysA diaminopimelate decarboxylase | 841 | 0.0e+00
|
| sgr | SGR_2183 putative diaminopimelate decarboxylase | 837 | 0.0e+00
|
| sam | SAM23877_5097 putative diaminopimelate decarboxylase | 823 | 0.0e+00
|
| scab | SCAB28971 putative diaminopimelate decarboxylase | 827 | 0.0e+00
|
| sace | SACE_6299 diaminopimelate decarboxylase | 565 | 0.0e+00
|
| nfar | nfa10480 lysA diaminopimelate decarboxylase | 504 | 8.0e-144
|
| mtub | gi|15608433 PROBABLE DIAMINOPIMELATE DECARBOXYLASE LYSA (DAP DECARBOXYLASE) [Mycobacterium tuberculosis H37Rv] | 489 | 1.2e-139
|
| cglu | gi|19552404 COG0019:Diaminopimelate decarboxylase [Corynebacterium glutamicum] | 442 | 1.2e-125
|
| bsub | BG10510 lysA, Lys; diaminopimelate decarboxylase [EC:4.1.1.20] | 384 | 4.7e-108
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Orn_Arg_deC_N | 1 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 72-327 | 230.8 | 1.4e-68
|
| Orn_DAP_Arg_deC | 1 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain | 333-419 | 54.4 | 1e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| QIY98274.1 | diaminopimelate decarboxylase [Streptomyces sp. S1D4-11]
| 2245 | 0.0e+00 |
| WP_067368986.1 | diaminopimelate decarboxylase [Streptomyces olivochromogenes...
| 2235 | 0.0e+00 |
| WP_103550978.1 | diaminopimelate decarboxylase [Streptomyces populi] >gb
| 2233 | 0.0e+00 |
| WP_099920655.1 | diaminopimelate decarboxylase [Streptomyces mirabilis] >dbj
| 2223 | 0.0e+00 |
| WP_075028919.1 | diaminopimelate decarboxylase [Streptomyces mirabilis] >emb
| 2220 | 0.0e+00 |
| WP_143602927.1 | MULTISPECIES: diaminopimelate decarboxylase [unclassified St...
| 2218 | 0.0e+00 |
| WP_054233238.1 | MULTISPECIES: diaminopimelate decarboxylase [unclassified St...
| 2218 | 0.0e+00 |
| WP_095936663.1 | diaminopimelate decarboxylase [Streptomyces sp. Tue6028] >gb...
| 2217 | 0.0e+00 |
| WP_060901318.1 | diaminopimelate decarboxylase [Streptomyces sp. WAC00263] >l...
| 2216 | 0.0e+00 |
| WP_095852584.1 | diaminopimelate decarboxylase [Streptomyces sp. Ag82_O1-15] ...
| 2215 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2500 | Seems to have no N-terminal signal seq.
|