| ID | SAVERM_2945
| Type | CDS
|
| From | 3694849
| nt length | 1101
|
| To | 3693749
| aa length | 366
|
| Gene | ku1
| pI | 10.14
|
| Definition | putative Ku70/Ku80 protein
| M.W (Da) | 39584
|
| Note | probably involving non-homologous end-joining, PF02735: Ku70/Ku80 beta-barrel domain
| AseI frg. | N
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5309 hypothetical protein | 483 | 1.0e-172
|
| sgr | SGR_2195 putative Ku70/Ku80 protein | 452 | 4.0e-160
|
| sam | SAM23877_5082 Non-homologous end joining protein Ku | 459 | 4.0e-163
|
| scab | SCAB29491 putative Ku70/Ku80 protein | 456 | 1.0e-161
|
| sace | SACE_3709 DNA binding protein, Ku-like | 214 | 3.0e-68
|
| nfar | nfa34910 hypothetical protein | 196 | 2.7e-51
|
| mtub | gi|15608077 hypothetical protein Rv0937c [Mycobacterium tuberculosis H37Rv] | 193 | 1.7e-50
|
| bsub | BG13265 ykoV; similar to hypothetical proteins | 167 | 6.9e-43
|
| paer | PA2150 [gene=PA2150] [prot=conserved hypothetical protein] [comment=PA2150] | 144 | 1.3e-35
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ku | 1 | Ku70/Ku80 beta-barrel domain | 14-193 | 114.2 | 6.1e-33
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have an uncleavable N-term signal seq
|