| ID | SAVERM_3076
| Type | CDS
|
| From | 3842164
| nt length | 3609
|
| To | 3838556
| aa length | 1202
|
| Gene | addB
| pI | 4.58
|
| Definition | putative ATP-dependent DNA helicase
| M.W (Da) | 130424
|
| Note | PF00580: UvrD/REP helicase
| AseI frg. | X
|
| SignalP v.4.0 | Signal peptide | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5184 putative ATP-dependent DNA helicase | 1811 | 0.0e+00
|
| sgr | SGR_2341 putative ATP-dependent DNA helicase | 1635 | 0.0e+00
|
| sam | SAM23877_4967 hypothetical protein | 1785 | 0.0e+00
|
| scab | SCAB30761 putative ATP-dependent DNA helicase | 1907 | 0.0e+00
|
| sace | SACE_1078 probable ATP-dependent DNA helicase | 479 | 8.0e-151
|
| nfar | nfa45380 DNA helicase | 622 | 4.4e-179
|
| mtub | gi|15610337 PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis H37Rv] | 487 | 2.2e-138
|
| cglu | gi|19552002 COG0210:Superfamily I DNA and RNA helicases [Corynebacterium glutamicum] | 395 | 6.1e-111
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| UvrD-helicase | 1 | UvrD/REP helicase N-terminal domain | 42-346 | 166.5 | 9.7e-49
|
| UvrD_C | 2 | UvrD-like helicase C-terminal domain | 359-510, 580-771 | 100.6 | 1e-28
|
| AAA_19 | 1 | AAA domain | 48-330 | 86.0 | 2.8e-24
|
| PDDEXK_1 | 1 | PD-(D/E)XK nuclease superfamily | 1017-1164 | 41.2 | 1.6e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_107083284.1 | UvrD-helicase domain-containing protein [Streptomyces sp. SI...
| 5267 | 0.0e+00 |
| BCL27857.1 | ATP-dependent DNA helicase [Streptomyces glomeroaurantiacus]
| 4532 | 0.0e+00 |
| GAX51188.1 | ATP-dependent DNA helicase [Streptomyces olivochromogenes]
| 4529 | 0.0e+00 |
| PBC96352.1 | DNA helicase-2/ATP-dependent DNA helicase PcrA [Streptomyces sp. ...
| 4525 | 0.0e+00 |
| GHA12385.1 | ATP-dependent DNA helicase [Streptomyces tauricus]
| 4524 | 0.0e+00 |
| SOE66720.1 | DNA helicase-2 / ATP-dependent DNA helicase PcrA [Streptomyces s...
| 4522 | 0.0e+00 |
| SFF48107.1 | DNA helicase-2 / ATP-dependent DNA helicase PcrA [Streptomyces m...
| 4517 | 0.0e+00 |
|
| 4513 | 0.0e+00 |
| GHD69767.1 | ATP-dependent DNA helicase [Streptomyces mirabilis]
| 4506 | 0.0e+00 |
| QDN90005.1 | ATP-dependent helicase [Streptomyces sp. RLB3-6] >gb
| 4505 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|