| ID | SAVERM_3098
| Type | CDS
|
| From | 3871098
| nt length | 2280
|
| To | 3873377
| aa length | 759
|
| Gene | rhlE
| pI | 10.07
|
| Definition | putative ATP-dependent RNA helicase
| M.W (Da) | 81238
|
| Note | PF00270: DEAD/DEAH box helicase
| AseI frg. | X
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| sgr | SGR_2359 putative ATP-dependent RNA helicase | 779 | 0.0e+00
|
| sam | SAM23877_4947 putative helicase | 796 | 0.0e+00
|
| scab | SCAB30971 putative ATP-dependent RNA helicase | 875 | 0.0e+00
|
| sace | SACE_1060 putative ATP-dependent RNA helicase | 531 | 0.0e+00
|
| nfar | nfa45730 ATP-dependent RNA helicase | 597 | 9.3e-172
|
| mtub | gi|15610347 PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium tuberculosis H37Rv] | 484 | 8.8e-138
|
| cglu | gi|19551997 COG0513:Superfamily II DNA and RNA helicases [Corynebacterium glutamicum] | 414 | 6.0e-117
|
| bsub | BG12085 ydbR; similar to ATP-dependent RNA helicase | 298 | 7.8e-82
|
| ecoli | gi|16131054 cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli K12] | 270 | 3.4e-73
|
*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DEAD | 1 | DEAD/DEAH box helicase | 2-169 | 160.9 | 2.3e-47
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 212-321 | 102.2 | 1.8e-29
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2989 | Seems to have no N-terminal signal seq.
|