| ID | SAVERM_3115
| Type | CDS
|
| From | 3889769
| nt length | 1860
|
| To | 3887910
| aa length | 619
|
| Gene | pepD1
| pI | 11.6
|
| Definition | putative serine protease
| M.W (Da) | 64251
|
| Note | PF00089: Trypsin
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5149 putative protease | 563 | 0.0e+00
|
| sgr | SGR_2376 putative serine proteinase | 532 | 0.0e+00
|
| sam | SAM23877_4928 putative protease | 555 | 0.0e+00
|
| scab | SCAB31131 putative serine protease | 510 | 5.0e-177
|
| sace | SACE_0765 possible serine protease, C-terminal | 238 | 1.0e-70
|
| mtub | gi|15608123 PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B) [Mycobacterium tuberculosis H37Rv] | 263 | 1.9e-71
|
| bsub | BG12608 htrA, ykdA; serine protease Do (heat-shock protein) [EC:3.4.21.-] | 169 | 4.4e-43
|
| paer | PA0766 [gene=mucD] [prot=serine protease MucD precursor] [comment=PA0766] | 174 | 1.6e-44
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Trypsin_2 | 1 | Trypsin-like peptidase domain | 331-477 | 117.8 | 7e-34
|
| PDZ_2 | 1 | PDZ domain | 524-611 | 66.4 | 2e-18
|
| Trypsin | 1 | Trypsin | 313-506 | 46.3 | 4e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| MYS98710.1 | PDZ domain-containing protein [Streptomyces sp. SID5469]
| 2261 | 0.0e+00 |
| WP_151479041.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1464 | 0.0e+00 |
| WP_217460137.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1441 | 0.0e+00 |
| WP_055610563.1 | trypsin-like peptidase domain-containing protein, partial [S...
| 1433 | 0.0e+00 |
| WP_107020180.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1426 | 0.0e+00 |
| WP_181867177.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1425 | 0.0e+00 |
| WP_189320836.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1425 | 0.0e+00 |
| WP_181655331.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1424 | 0.0e+00 |
| WP_234383162.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1422 | 0.0e+00 |
| WP_095936465.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1422 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4185 | Seems to have no N-terminal signal seq.
|