| ID | SAVERM_3125
| Type | CDS
|
| From | 3898400
| nt length | 1080
|
| To | 3897321
| aa length | 359
|
| Gene | dapE
| pI | 4.73
|
| Definition | putative succinyl-diaminopimelate desuccinylase
| M.W (Da) | 38466
|
| Note | PF01546: Peptidase family M20/M25/M40
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5139 dapE succinyl-diaminopimelate desuccinylase | 606 | 0.0e+00
|
| sgr | SGR_2386 putative succinyl-diaminopimelate desuccinylase | 600 | 0.0e+00
|
| sam | SAM23877_4918 Succinyl-diaminopimelate desuccinylase | 608 | 0.0e+00
|
| scab | SCAB31231 putative succinyl-diaminopimelate desuccinylase | 607 | 0.0e+00
|
| sace | SACE_1018 succinyl-diaminopimelate desuccinylase (SDAP) | 381 | 1.0e-132
|
| nfar | nfa47410 dapE succinyl-diaminopimelate desuccinylase | 372 | 2.1e-104
|
| mtub | gi|57116842 succinyl-diaminopimelate desuccinylase [Mycobacterium tuberculosis H37Rv] | 351 | 3.7e-98
|
| cglu | gi|19552335 COG0624:Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Corynebacterium glutamicum] | 341 | 2.7e-95
|
| ecoli | gi|16130397 succinyl-diaminopimelate desuccinylase [Escherichia coli K12] | 88 | 7.6e-19
|
| paer | PA1162 [gene=dapE] [prot=succinyl-diaminopimelate desuccinylase] [comment=PA1162] | 94 | 1.5e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Peptidase_M20 | 1 | Peptidase family M20/M25/M40 | 68-352 | 78.7 | 4.5e-22
|
| M20_dimer | 1 | Peptidase dimerisation domain | 170-268 | 52.9 | 2.7e-14
|
| Peptidase_M28 | 1 | Peptidase family M28 | 54-153 | 41.1 | 1.4e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_043674718.1 | succinyl-diaminopimelate desuccinylase [Streptomyces xylopha...
| 1553 | 0.0e+00 |
| WP_093628995.1 | succinyl-diaminopimelate desuccinylase [Streptomyces sp. 321...
| 1547 | 0.0e+00 |
| WP_019058184.1 | succinyl-diaminopimelate desuccinylase [Streptomyces prunico...
| 1546 | 0.0e+00 |
| WP_150947145.1 | succinyl-diaminopimelate desuccinylase [Streptomyces luteoli...
| 1546 | 0.0e+00 |
| WP_168495271.1 | MULTISPECIES: succinyl-diaminopimelate desuccinylase [Strept...
| 1545 | 0.0e+00 |
| WP_067368472.1 | MULTISPECIES: succinyl-diaminopimelate desuccinylase [Strept...
| 1544 | 0.0e+00 |
| SEE43073.1 | succinyldiaminopimelate desuccinylase [Streptomyces sp. 3213] [S...
| 1544 | 0.0e+00 |
| WP_075028779.1 | succinyl-diaminopimelate desuccinylase [Streptomyces mirabil...
| 1543 | 0.0e+00 |
| WP_095852740.1 | succinyl-diaminopimelate desuccinylase [Streptomyces sp. Ag8...
| 1542 | 0.0e+00 |
| WP_200686631.1 | succinyl-diaminopimelate desuccinylase [Streptomyces sp. MBT...
| 1540 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3064 | Seems to have no N-terminal signal seq.
|