| ID | SAVERM_3207
| Type | CDS
|
| From | 3999662
| nt length | 1089
|
| To | 3998574
| aa length | 362
|
| Gene |
| pI | 4.36
|
| Definition | putative GTP binding protein
| M.W (Da) | 39091
|
| Note | PF06071: Protein of unknown function (DUF933)
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5061 putative ATP/GTP binding protein | 640 | 0.0e+00
|
| sgr | SGR_2469 putative GTP binding protein | 627 | 0.0e+00
|
| sam | SAM23877_4859 putative GTP-binding protein | 636 | 0.0e+00
|
| scab | SCAB33441 putative GTP binding protein | 652 | 0.0e+00
|
| sace | SACE_0960 GTP-binding protein YchF | 521 | 0.0e+00
|
| nfar | nfa47850 GTP-binding protein | 503 | 1.3e-143
|
| mtub | gi|15608252 Probable GTP binding protein [Mycobacterium tuberculosis H37Rv] | 468 | 2.8e-133
|
| cglu | gi|19552253 COG0012:Predicted GTPase [Corynebacterium glutamicum] | 505 | 1.1e-144
|
| bsub | BG10050 yyaF; GTP-binding protein | 372 | 2.4e-104
|
| ecoli | gi|16129166 putative GTP-binding protein [Escherichia coli K12] | 358 | 3.1e-100
|
| paer | PA4673 [gene=PA4673] [prot=conserved hypothetical protein] [comment=PA4673] | 359 | 1.9e-100
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| YchF-GTPase_C | 1 | Protein of unknown function (DUF933) | 278-361 | 134.4 | 1.1e-39
|
| MMR_HSR1 | 1 | 50S ribosome-binding GTPase | 5-123 | 79.2 | 2.2e-22
|
| FeoB_N | 1 | Ferrous iron transport protein B | 4-48 | 34.2 | 1.5e-08
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189147172.1 | redox-regulated ATPase YchF [Streptomyces lacrimifluminis] >...
| 1643 | 0.0e+00 |
| WP_010352780.1 | redox-regulated ATPase YchF [Streptomyces acidiscabies] >lcl...
| 1638 | 0.0e+00 |
| WP_037694804.1 | redox-regulated ATPase YchF [Streptomyces scabiei] >gb
| 1633 | 0.0e+00 |
| WP_055526054.1 | redox-regulated ATPase YchF [Streptomyces graminilatus]
| 1632 | 0.0e+00 |
| NEA67873.1 | redox-regulated ATPase YchF [Streptomyces sp. SID12488]
| 1631 | 0.0e+00 |
| WP_059072942.1 | MULTISPECIES: redox-regulated ATPase YchF [Streptomyces] >db...
| 1630 | 0.0e+00 |
| WP_053741080.1 | redox-regulated ATPase YchF [Streptomyces sp. NRRL WC-3618]
| 1629 | 0.0e+00 |
| NEC87571.1 | redox-regulated ATPase YchF [Streptomyces sp. SID12501]
| 1627 | 0.0e+00 |
|
| 1627 | 0.0e+00 |
| WP_217455938.1 | redox-regulated ATPase YchF [Streptomyces sp. BV286] >lcl
| 1626 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|