| ID | SAVERM_3281
| Type | CDS
|
| From | 4082240
| nt length | 1272
|
| To | 4083511
| aa length | 423
|
| Gene |
| pI | 5.43
|
| Definition | putative D-amino acid deaminase
| M.W (Da) | 45613
|
| Note | PF01168: Alanine racemase, N-terminal domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4987 putative D-amino acid deaminase | 675 | 0.0e+00
|
| sgr | SGR_2546 putative D-amino acid deaminase | 616 | 0.0e+00
|
| sam | SAM23877_4799 D-amino acid deaminase | 670 | 0.0e+00
|
| scab | SCAB33961 putative D-amino acid deaminase | 647 | 0.0e+00
|
| sace | SACE_5299 D-amino acid deaminase | 369 | 7.0e-126
|
| nfar | nfa19290 hypothetical protein | 293 | 2.5e-80
|
| cglu | gi|19553808 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 64 | 7.8e-12
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| D-ser_dehydrat | 1 | Putative serine dehydratase domain | 312-407 | 56.0 | 4.4e-15
|
| Ala_racemase_N | 1 | Alanine racemase, N-terminal domain | 53-258 | 51.7 | 7.9e-14
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1319 | Seems to have no N-terminal signal seq.
|