| ID | SAVERM_3301
| Type | CDS
|
| From | 4109721
| nt length | 498
|
| To | 4110218
| aa length | 165
|
| Gene | greA
| pI | 4.24
|
| Definition | putative transcription elongation factor
| M.W (Da) | 17759
|
| Note | PF03449: Prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA elongation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4965 putative transcription elongation factor | 306 | 2.0e-109
|
| sgr | SGR_2564 putative transcription elongation factor | 295 | 7.0e-105
|
| sam | SAM23877_4781 Transcription elongation factor GreA | 308 | 5.0e-110
|
| scab | SCAB34321 putative transcription elongation factor | 312 | 1.0e-111
|
| sace | SACE_0907 transcription elongation factor G | 171 | 4.0e-56
|
| nfar | nfa48260 greA transcription elongation factor | 181 | 2.9e-47
|
| mtub | gi|15608220 transcription elongation factor GreA [Mycobacterium tuberculosis H37Rv] | 171 | 2.3e-44
|
| cglu | gi|19552211 COG0782:Transcription elongation factor [Corynebacterium glutamicum] | 124 | 3.0e-30
|
| bsub | BG19019 greA; transcription elongation factor | 82 | 1.2e-17
|
| ecoli | gi|49176324 transcription elongation factor GreA [Escherichia coli K12] | 78 | 2.0e-16
|
| paer | PA4755 [gene=greA] [prot=transcription elongation factor GreA] [comment=PA4755] | 77 | 6.0e-16
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| GreA_GreB_N | 1 | Transcription elongation factor, N-terminal | 10-79 | 88.4 | 2.3e-25
|
| GreA_GreB | 1 | Transcription elongation factor, GreA/GreB, C-term | 86-161 | 46.1 | 3.1e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_148010202.1 | transcription elongation factor GreA [Streptomyces sp. me109...
| 768 | 4.8e-103 |
| WP_202497434.1 | transcription elongation factor GreA [Streptomyces sp. SID54...
| 763 | 4.4e-102 |
| WP_028803024.1 | transcription elongation factor GreA [Streptomyces sp. 142MF...
| 754 | 7.1e-101 |
| WP_054234773.1 | MULTISPECIES: transcription elongation factor GreA [Streptom...
| 754 | 7.6e-101 |
| WP_168495037.1 | MULTISPECIES: transcription elongation factor GreA [Streptom...
| 752 | 1.5e-100 |
| WP_095936268.1 | transcription elongation factor GreA [Streptomyces sp. Tue60...
| 750 | 2.4e-100 |
| WP_189190004.1 | transcription elongation factor GreA [Streptomyces albiflave...
| 750 | 2.6e-100 |
| WP_153288900.1 | transcription elongation factor GreA [Streptomyces fagopyri]...
| 750 | 2.8e-100 |
| WP_168529953.1 | transcription elongation factor GreA [Streptomyces sp. RPA4-...
| 750 | 2.9e-100 |
| WP_128380852.1 | transcription elongation factor GreA [Streptomyces cavernae]
| 748 | 5.3e-100 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3732 | Seems to have no N-terminal signal seq.
|