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IDSAVERM_3304 TypeCDS
From4112753 nt length501
To4113253 aa length166
Genesig59 pI10.95
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)18153
Notesimilar to SCO4960, PF04545: Sigma-70, region 4 AseI frg.E
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4960 hypothetical protein2341.0e-80
sgrSGR_2576 putative RNA polymerase ECF-subfamily sigma factor1293.0e-39
samSAM23877_4776 putative sigma factor2232.0e-76
scabSCAB34351 putative RNA polymerase sigma factor2245.0e-77

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4101-14531.39.7e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_099499567.1 MULTISPECIES: RNA polymerase subunit sigma-70 [Streptomyces]... 6304.9e-82
WP_211118058.1 RNA polymerase subunit sigma-70 [Streptomyces sp. RPA4-2] 6184.1e-80
WP_229703548.1 RNA polymerase subunit sigma-70 [Streptomyces albiflavescens... 6159.2e-80
WP_187285681.1 RNA polymerase subunit sigma-70 [Streptomyces sp. me109] 6122.9e-79
WP_028803019.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sp... 6071.9e-78
WP_210585527.1 RNA polymerase subunit sigma-70 [Streptomyces sp. GESEQ-35] 6053.6e-78
WP_081221778.1 RNA polymerase subunit sigma-70 [Streptomyces sp. M41(2017)] 6054.5e-78
WP_067368079.1 RNA polymerase subunit sigma-70 [Streptomyces olivochromogen... 6054.5e-78
WP_177324292.1 RNA polymerase subunit sigma-70 [Streptomyces mirabilis] >em... 6046.6e-78
WP_179857072.1 RNA polymerase subunit sigma-70 [Streptomyces sp. OV198] >em... 6039.2e-78

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.0228 Seems to have no N-terminal signal seq.