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IDSAVERM_3351 TypeCDS
From4168249 nt length621
To4167629 aa length206
Genesig25 pI4.8
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23188
Notesimilar to SCO4908, PF08281: Sigma-70, region 4 AseI frg.E
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4908 putative RNA polymerase sigma factor (fragment)3515.0e-126
sgrSGR_2634 putative RNA polymerase ECF-subfamily sigma factor3502.0e-125
samSAM23877_4728 RNA polymerase ECF-subfamily sigma factor3639.0e-130
scabSCAB34791 putative RNA polymerase sigma factor3747.0e-134
saceSACE_7161 RNA polymerase ECF sigma factor952.0e-25

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4134-18555.82.5e-15

Sigma70_r41Sigma-70, region 4138-18749.81.7e-13

Sigma70_r21Sigma-70 region 244-10744.87.3e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_189837306.1 SigE family RNA polymerase sigma factor [Streptomyces umbrin... 10099.5e-138
WP_200396219.1 SigE family RNA polymerase sigma factor [Streptomyces sp. ZY... 10091.2e-137
WP_143644506.1 SigE family RNA polymerase sigma factor [Streptomyces sp. IB... 10091.2e-137
WP_210880671.1 SigE family RNA polymerase sigma factor [Streptomyces sp. BH... 10081.5e-137
WP_107463481.1 SigE family RNA polymerase sigma factor [Streptomyces sp. MA... 10053.6e-137
WP_099969551.1 SigE family RNA polymerase sigma factor [Streptomyces sp. JV... 10046.7e-137
WP_046918357.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 10039.7e-137
WP_217452846.1 SigE family RNA polymerase sigma factor [Streptomyces sp. BV... 10021.3e-136
WP_189191674.1 SigE family RNA polymerase sigma factor [Streptomyces albifl... 10002.9e-136
WP_152869390.1 SigE family RNA polymerase sigma factor [Streptomyces acidic... 10003.6e-136

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2446 Seems to have no N-terminal signal seq.