| ID | SAVERM_3360
| Type | CDS
|
| From | 4176248
| nt length | 954
|
| To | 4175295
| aa length | 317
|
| Gene |
| pI | 7.28
|
| Definition | putative LysR-family transcriptional regulator
| M.W (Da) | 34609
|
| Note | PF03466: LysR substrate binding domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4897 putative transcriptional regulator | 556 | 0.0e+00
|
| sgr | SGR_2643 putative LysR-family transcriptional regulator | 536 | 0.0e+00
|
| sam | SAM23877_4719 putative HTH-type transcriptional regulator YybE | 560 | 0.0e+00
|
| scab | SCAB34891 putative LysR-family transcriptional regulator | 567 | 0.0e+00
|
| sace | SACE_1031 LysR-family transcriptional regulator | 216 | 2.0e-69
|
| cglu | gi|19554113 COG0583:Transcriptional regulator [Corynebacterium glutamicum] | 197 | 7.1e-52
|
| bsub | BG10026 yybE; positive Regulator of yybF (LysR family) | 213 | 9.1e-57
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LysR_substrate | 1 | LysR substrate binding domain | 110-310 | 172.0 | 1e-50
|
| HTH_1 | 1 | Bacterial regulatory helix-turn-helix protein, lysR family | 27-84 | 65.7 | 2.4e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_181359239.1 | LysR family transcriptional regulator [Streptomyces sporangi...
| 1324 | 0.0e+00 |
| WP_171060035.1 | LysR family transcriptional regulator [Streptomyces montanus...
| 1323 | 0.0e+00 |
|
| 1317 | 0.0e+00 |
|
| 1316 | 0.0e+00 |
| WP_165267394.1 | LysR family transcriptional regulator [Streptomyces scabiche...
| 1309 | 1.8e-180 |
| WP_164423326.1 | LysR family transcriptional regulator [Streptomyces sp. SID1...
| 1307 | 4.0e-180 |
| WP_189322350.1 | LysR family transcriptional regulator [Streptomyces flaveus]...
| 1306 | 5.6e-180 |
| WP_101400295.1 | MULTISPECIES: LysR family transcriptional regulator [Strepto...
| 1305 | 8.7e-180 |
| WP_225859174.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1304 | 1.0e-179 |
| WP_223065021.1 | LysR family transcriptional regulator [Streptomyces sp. IB20...
| 1300 | 4.2e-179 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1447 | Seems to have no N-terminal signal seq.
|