| ID | SAVERM_3396
| Type | CDS
|
| From | 4217790
| nt length | 483
|
| To | 4218272
| aa length | 160
|
| Gene | sdhD
| pI | 10.31
|
| Definition | putative succinate dehydrogenase hydrophobic membrane anchor protein (complex II)
| M.W (Da) | 17694
|
| Note | PF01127: Succinate dehydrogenase cytochrome b subunit
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | TCA cycle
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4857 putative succinate dehydrogenase membrane subunit | 268 | 2.0e-94
|
| sgr | SGR_2688 putative succinate dehydrogenase membrane subunit | 276 | 9.0e-98
|
| sam | SAM23877_4674 Succinate dehydrogenase, hydrophobic membrane anchor protein | 260 | 2.0e-91
|
| scab | SCAB35281 putative succinate dehydrogenase hydrophobic membrane anchor protein (complex II) | 271 | 1.0e-95
|
| sace | SACE_6583 probable succinate dehydrogenase hydrophobic membrane anchor protein | 151 | 1.0e-48
|
| nfar | nfa9480 sdhD succinate dehydrogenase membrane subunit | 173 | 7.3e-45
|
| mtub | gi|15610453 PROBABLE SUCCINATE DEHYDROGENASE (HYDROPHOBIC MEMBRANE ANCHOR SUBUNIT) SDHD (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) [Mycobacterium tuberculosis H37Rv] | 160 | 5.0e-41
|
| ecoli | gi|16128697 succinate dehydrogenase cytochrome b556 small membrane subunit [Escherichia coli K12] | 36 | 1.1e-03
|
| paer | PA1582 [gene=sdhD] [prot=succinate dehydrogenase (D subunit)] [comment=PA1582] | 36 | 1.5e-03
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Sdh_cyt | 1 | Succinate dehydrogenase/Fumarate reductase transmembrane subunit | 38-142 | 64.0 | 1.1e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_071367104.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 608 | 7.9e-79 |
| WP_059128508.1 | MULTISPECIES: succinate dehydrogenase hydrophobic membrane a...
| 605 | 2.3e-78 |
| WP_103837433.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 600 | 1.2e-77 |
| WP_055493287.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 599 | 2.2e-77 |
| WP_095936184.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 597 | 4.5e-77 |
| WP_234513291.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 596 | 6.2e-77 |
| WP_200418937.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 595 | 7.5e-77 |
| WP_095852974.1 | MULTISPECIES: succinate dehydrogenase hydrophobic membrane a...
| 594 | 1.4e-76 |
| WP_026150201.1 | MULTISPECIES: succinate dehydrogenase hydrophobic membrane a...
| 593 | 1.6e-76 |
| WP_168529850.1 | succinate dehydrogenase hydrophobic membrane anchor subunit ...
| 593 | 1.6e-76 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5798 | Seems to have no N-terminal signal seq.
|