| ID | SAVERM_3397
| Type | CDS
|
| From | 4218295
| nt length | 1755
|
| To | 4220049
| aa length | 584
|
| Gene | sdhA1
| pI | 5.44
|
| Definition | putative succinate dehydrogenase flavoprotein subunit (complex II)
| M.W (Da) | 64683
|
| Note | PF00890: FAD binding domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | TCA cycle
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4856 dhsA putative succinate dehydrogenase flavoprotein subunit | 1107 | 0.0e+00
|
| sgr | SGR_2689 putative succinate dehydrogenase flavoprotein subunit | 1083 | 0.0e+00
|
| sam | SAM23877_4673 succinate dehydrogenase, flavoprotein subunit | 1105 | 0.0e+00
|
| scab | SCAB35291 putative succinate dehydrogenase flavoprotein subunit (complex II) | 1088 | 0.0e+00
|
| sace | SACE_6584 succinate dehydrogenase flavoprotein subunit | 873 | 0.0e+00
|
| nfar | nfa9470 sdhA succinate dehydrogenase flavoprotein subunit | 869 | 0.0e+00
|
| mtub | gi|15610454 succinate dehydrogenase [Mycobacterium tuberculosis H37Rv] | 848 | 0.0e+00
|
| ecoli | gi|16128698 succinate dehydrogenase catalytic subunit [Escherichia coli K12] | 543 | 1.5e-155
|
| paer | PA1583 [gene=sdhA] [prot=succinate dehydrogenase (A subunit)] [comment=PA1583] | 520 | 1.5e-148
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| FAD_binding_2 | 1 | FAD binding domain | 7-400 | 382.7 | 2.3e-114
|
| Succ_DH_flav_C | 1 | Fumarate reductase flavoprotein C-term | 454-584 | 154.5 | 1.2e-45
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_075028382.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces m...
| 2919 | 0.0e+00 |
| WP_099921006.1 | MULTISPECIES: succinate dehydrogenase flavoprotein subunit [...
| 2915 | 0.0e+00 |
| WP_054233702.1 | MULTISPECIES: succinate dehydrogenase flavoprotein subunit [...
| 2912 | 0.0e+00 |
| QIY97861.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces sp. S1...
| 2911 | 0.0e+00 |
| WP_189191610.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces a...
| 2910 | 0.0e+00 |
| WP_067366675.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces o...
| 2909 | 0.0e+00 |
| WP_153288997.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces f...
| 2907 | 0.0e+00 |
| WP_095852975.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces s...
| 2905 | 0.0e+00 |
| WP_103550162.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces p...
| 2904 | 0.0e+00 |
| WP_097224991.1 | succinate dehydrogenase flavoprotein subunit [Streptomyces s...
| 2904 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have no N-terminal signal seq.
|