| ID | SAVERM_3452
| Type | CDS
|
| From | 4276685
| nt length | 1179
|
| To | 4275507
| aa length | 392
|
| Gene | sucC2
| pI | 4.38
|
| Definition | putative succinyl-CoA synthetase beta subunit
| M.W (Da) | 41106
|
| Note | PF08442: ATP-grasp domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | TCA cycle
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4808 sucC succinyl-CoA synthetase beta chain | 652 | 0.0e+00
|
| sgr | SGR_2723 putative succinyl-CoA synthetase beta chain | 684 | 0.0e+00
|
| sam | SAM23877_4623 succinyl-CoA synthetase, beta subunit | 664 | 0.0e+00
|
| scab | SCAB35801 putative succinyl-CoA synthetase beta subunit | 653 | 0.0e+00
|
| sace | SACE_6669 putative succinyl-CoA synthetase beta subunit | 530 | 0.0e+00
|
| nfar | nfa49910 sucC succinyl-CoA synthetase beta subunit | 498 | 4.7e-142
|
| mtub | gi|15608091 succinyl-CoA synthetase subunit beta [Mycobacterium tuberculosis H37Rv] | 503 | 1.1e-143
|
| cglu | gi|19553762 COG0045:Succinyl-CoA synthetase beta subunit [Corynebacterium glutamicum] | 476 | 6.0e-136
|
| bsub | BG12680 sucC; succinyl-CoA synthetase beta chain [EC:6.2.1.5] | 296 | 1.4e-81
|
| ecoli | gi|16128703 succinyl-CoA synthetase subunit beta [Escherichia coli K12] | 286 | 2.1e-78
|
| paer | PA1588 [gene=sucC] [prot=succinyl-CoA synthetase beta chain] [comment=PA1588] | 286 | 2.2e-78
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ATP-grasp_2 | 1 | ATP-grasp domain | 2-195 | 225.3 | 5.1e-67
|
| Ligase_CoA | 1 | CoA-ligase | 257-368 | 52.7 | 3.7e-14
|
| ATP-grasp_5 | 1 | ATP-grasp domain | 3-211 | 31.8 | 8.8e-08
|
| GARS_A | 1 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | 8-93 | 26.9 | 3.3e-06
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498089.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1755 | 0.0e+00 |
| WP_190033236.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1737 | 0.0e+00 |
| WP_055512431.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1719 | 0.0e+00 |
| WP_210880750.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1718 | 0.0e+00 |
| WP_189769621.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1718 | 0.0e+00 |
| WP_190850538.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1717 | 0.0e+00 |
| WP_107015728.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1713 | 0.0e+00 |
| WP_151477099.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1698 | 0.0e+00 |
| WP_221347826.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1682 | 0.0e+00 |
| WP_173315188.1 | ADP-forming succinate--CoA ligase subunit beta [Streptomyces...
| 1675 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1749 | Seems to have no N-terminal signal seq.
|