| ID | SAVERM_3563
| Type | CDS
|
| From | 4413467
| nt length | 594
|
| To | 4414060
| aa length | 197
|
| Gene | rplY
| pI | 4.52
|
| Definition | putative ribosomal protein L25
| M.W (Da) | 20726
|
| Note | PF01386: Ribosomal L25p family
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3124 ribosomal L25p family protein | 257 | 5.0e-89
|
| sgr | SGR_4382 putative 50S ribosomal protein L25 | 235 | 3.0e-80
|
| sam | SAM23877_3173 50S ribosomal protein L25 | 276 | 2.0e-96
|
| scab | SCAB54151 putative ribosomal protein L25 | 336 | 6.0e-120
|
| sace | SACE_0811 50S ribosomal protein L25 | 170 | 2.0e-54
|
| nfar | nfa48940 rplY ribosomal protein L25 | 163 | 8.2e-42
|
| mtub | gi|15608155 50S ribosomal protein L25 [Mycobacterium tuberculosis H37Rv] | 163 | 6.4e-42
|
| cglu | gi|19552165 COG1825:Ribosomal protein L25 (general stress protein Ctc) [Corynebacterium glutamicum] | 135 | 1.3e-33
|
| bsub | BG10115 ctc; 50S ribosomal protein L25, general stress protein | 90 | 6.0e-20
|
| ecoli | gi|16130123 50S ribosomal protein L25 [Escherichia coli K12] | 50 | 7.8e-08
|
| paer | PA4671 [gene=PA4671] [prot=probable ribosomal protein L25] [comment=PA4671] | 85 | 2.3e-18
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L25p | 1 | Ribosomal L25p family | 6-90 | 89.4 | 1.5e-25
|
| Ribosomal_TL5_C | 1 | Ribosomal protein TL5, C-terminal domain | 98-178 | 68.2 | 5.6e-19
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_217452607.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 794 | 5.7e-106 |
| WP_190149631.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 793 | 6.7e-106 |
| WP_149514300.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 792 | 1.0e-105 |
| WP_107015615.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 790 | 2.5e-105 |
| WP_189775050.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 784 | 1.6e-104 |
| WP_069768599.1 | MULTISPECIES: 50S ribosomal protein L25/general stress prote...
| 783 | 2.4e-104 |
| WP_221360617.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 781 | 6.0e-104 |
| WP_200729290.1 | MULTISPECIES: 50S ribosomal protein L25/general stress prote...
| 779 | 1.1e-103 |
| WP_152169448.1 | 50S ribosomal protein L25/general stress protein Ctc [Strept...
| 778 | 1.3e-103 |
| WP_046917035.1 | MULTISPECIES: 50S ribosomal protein L25/general stress prote...
| 777 | 1.9e-103 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4075 | Seems to have no N-terminal signal seq.
|