| ID | SAVERM_3568
| Type | CDS
|
| From | 4419474
| nt length | 678
|
| To | 4420151
| aa length | 225
|
| Gene |
| pI | 9
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 24876
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3129 putative TetR-family transcriptional regulator | 453 | 1.0e-165
|
| sgr | SGR_4377 putative TetR-family transcriptional regulator | 387 | 3.0e-139
|
| sam | SAM23877_3179 TetR family transcriptional regulator | 437 | 3.0e-159
|
| scab | SCAB54091 putative TetR-family transcriptional regulator | 427 | 5.0e-155
|
| sace | SACE_0820 TetR-family transcriptional regulator | 310 | 6.0e-109
|
| nfar | nfa48770 transcriptional regulator | 234 | 4.6e-63
|
| mtub | gi|15608159 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 252 | 1.3e-68
|
| cglu | gi|19552187 COG1309:Transcriptional regulator [Corynebacterium glutamicum] | 237 | 3.0e-64
|
| paer | PA1226 [gene=PA1226] [prot=probable transcriptional regulator] [comment=PA1226] | 58 | 6.2e-10
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 35-79 | 58.6 | 3.6e-16
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_095754963.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 1174 | 5.6e-163 |
| WP_007450660.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [St...
| 1172 | 1.3e-162 |
| WP_187824820.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 1172 | 1.3e-162 |
| WP_128431430.1 | TetR/AcrR family transcriptional regulator [Streptomyces cya...
| 1171 | 1.8e-162 |
| WP_061444296.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [un...
| 1169 | 3.1e-162 |
| WP_181866879.1 | TetR/AcrR family transcriptional regulator [Streptomyces him...
| 1169 | 3.2e-162 |
| WP_216724886.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 1169 | 3.3e-162 |
| WP_102927246.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [St...
| 1169 | 3.3e-162 |
| WP_226027050.1 | TetR/AcrR family transcriptional regulator [Streptomyces hyd...
| 1169 | 4.1e-162 |
| PZT69319.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp. SW4]
| 1168 | 4.6e-162 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.5850 | Seems to have no N-terminal signal seq.
|